Analysis of interatomic Contacts of Structural Units in PDB entry:
8JHK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JHK entry

There are 3 chains in PDB entry 8JHK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 727
B	MET 1	LEU 1642
E	SER 1216	ALA 1355

There are109 helices in PDB entry 8JHK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	41	Right-handed alpha
Helix 2	AA2	A	45	47	Right-handed 310
Helix 3	AA3	A	64	69	Right-handed 310
Helix 4	AA4	A	80	94	Right-handed alpha
Helix 5	AA5	A	96	111	Right-handed alpha
Helix 6	AA6	A	114	123	Right-handed alpha
Helix 7	AA7	A	124	140	Right-handed alpha
Helix 8	AA8	A	140	167	Right-handed alpha
Helix 9	AA9	A	177	189	Right-handed alpha
Helix 10	AB1	A	194	212	Right-handed alpha
Helix 11	AB2	A	213	221	Right-handed alpha
Helix 12	AB3	A	224	229	Right-handed alpha
Helix 13	AB4	A	229	234	Right-handed alpha
Helix 14	AB5	A	236	253	Right-handed alpha
Helix 15	AB6	A	255	270	Right-handed alpha
Helix 16	AB7	A	270	279	Right-handed alpha
Helix 17	AB8	A	287	310	Right-handed alpha
Helix 18	AB9	A	317	333	Right-handed alpha
Helix 19	AC1	A	344	358	Right-handed alpha
Helix 20	AC2	A	366	372	Right-handed 310
Helix 21	AC3	A	378	391	Right-handed alpha
Helix 22	AC4	A	391	402	Right-handed alpha
Helix 23	AC5	A	412	429	Right-handed alpha
Helix 24	AC6	A	442	446	Right-handed 310
Helix 25	AC7	A	450	471	Right-handed alpha
Helix 26	AC8	A	476	494	Right-handed alpha
Helix 27	AC9	A	498	509	Right-handed alpha
Helix 28	AD1	A	510	521	Right-handed alpha
Helix 29	AD2	A	522	530	Right-handed alpha
Helix 30	AD3	A	530	559	Right-handed alpha
Helix 31	AD4	A	622	627	Right-handed alpha
Helix 32	AD5	A	636	640	Right-handed 310
Helix 33	AD6	A	659	672	Right-handed alpha
Helix 34	AD7	A	679	698	Right-handed alpha
Helix 35	AD8	A	699	701	Right-handed 310
Helix 36	AD9	B	8	11	Right-handed 310
Helix 37	AE1	B	62	64	Right-handed 310
Helix 38	AE2	B	83	104	Right-handed alpha
Helix 39	AE3	B	110	133	Right-handed alpha
Helix 40	AE4	B	137	159	Right-handed alpha
Helix 41	AE5	B	179	207	Right-handed alpha
Helix 42	AE6	B	209	219	Right-handed alpha
Helix 43	AE7	B	270	274	Right-handed 310
Helix 44	AE8	B	285	290	Right-handed alpha
Helix 45	AE9	B	378	389	Right-handed alpha
Helix 46	AF1	B	409	414	Right-handed alpha
Helix 47	AF2	B	520	525	Right-handed 310
Helix 48	AF3	B	537	544	Right-handed alpha
Helix 49	AF4	B	584	588	Right-handed 310
Helix 50	AF5	B	591	604	Right-handed alpha
Helix 51	AF6	B	634	642	Right-handed alpha
Helix 52	AF7	B	642	647	Right-handed alpha
Helix 53	AF8	B	649	658	Right-handed alpha
Helix 54	AF9	B	661	668	Right-handed alpha
Helix 55	AG1	B	668	683	Right-handed alpha
Helix 56	AG2	B	686	705	Right-handed alpha
Helix 57	AG3	B	709	711	Right-handed 310
Helix 58	AG4	B	712	724	Right-handed alpha
Helix 59	AG5	B	728	743	Right-handed alpha
Helix 60	AG6	B	746	758	Right-handed alpha
Helix 61	AG7	B	759	779	Right-handed alpha
Helix 62	AG8	B	783	802	Right-handed alpha
Helix 63	AG9	B	803	804	Right-handed 310
Helix 64	AH1	B	805	808	Right-handed 310
Helix 65	AH2	B	809	820	Right-handed alpha
Helix 66	AH3	B	823	828	Right-handed alpha
Helix 67	AH4	B	829	831	Right-handed 310
Helix 68	AH5	B	832	846	Right-handed alpha
Helix 69	AH6	B	852	866	Right-handed alpha
Helix 70	AH7	B	870	891	Right-handed alpha
Helix 71	AH8	B	895	915	Right-handed alpha
Helix 72	AH9	B	921	943	Right-handed alpha
Helix 73	AI1	B	949	964	Right-handed alpha
Helix 74	AI2	B	965	972	Right-handed alpha
Helix 75	AI3	B	978	998	Right-handed alpha
Helix 76	AI4	B	1006	1032	Right-handed alpha
Helix 77	AI5	B	1033	1037	Right-handed 310
Helix 78	AI6	B	1042	1055	Right-handed alpha
Helix 79	AI7	B	1058	1064	Right-handed alpha
Helix 80	AI8	B	1065	1077	Right-handed alpha
Helix 81	AI9	B	1078	1095	Right-handed alpha
Helix 82	AJ1	B	1097	1100	Right-handed 310
Helix 83	AJ2	B	1101	1114	Right-handed alpha
Helix 84	AJ3	B	1118	1125	Right-handed alpha
Helix 85	AJ4	B	1125	1138	Right-handed alpha
Helix 86	AJ5	B	1144	1162	Right-handed alpha
Helix 87	AJ6	B	1165	1181	Right-handed alpha
Helix 88	AJ7	B	1185	1215	Right-handed alpha
Helix 89	AJ8	B	1216	1234	Right-handed alpha
Helix 90	AJ9	B	1236	1255	Right-handed alpha
Helix 91	AK1	B	1257	1269	Right-handed alpha
Helix 92	AK2	B	1292	1311	Right-handed alpha
Helix 93	AK3	B	1314	1332	Right-handed alpha
Helix 94	AK4	B	1334	1355	Right-handed alpha
Helix 95	AK5	B	1373	1377	Right-handed 310
Helix 96	AK6	B	1390	1401	Right-handed alpha
Helix 97	AK7	B	1447	1457	Right-handed alpha
Helix 98	AK8	B	1513	1537	Right-handed alpha
Helix 99	AK9	B	1544	1556	Right-handed alpha
Helix 100	AL1	B	1560	1568	Right-handed alpha
Helix 101	AL2	B	1573	1578	Right-handed alpha
Helix 102	AL3	B	1583	1611	Right-handed alpha
Helix 103	AL4	B	1614	1635	Right-handed alpha
Helix 104	AL5	E	1217	1235	Right-handed alpha
Helix 105	AL6	E	1236	1255	Right-handed alpha
Helix 106	AL7	E	1257	1271	Right-handed alpha
Helix 107	AL8	E	1292	1312	Right-handed alpha
Helix 108	AL9	E	1314	1331	Right-handed alpha
Helix 109	AM1	E	1334	1354	Right-handed alpha

There are 14 sheets in PDB entry 8JHK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	9	first strand
Strand 2	A	23	25	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	77	79	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	563	first strand
Strand 2	A	574	579	anti-parallel
Strand 3	A	586	590	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	617	first strand
Strand 2	A	643	646	anti-parallel
Strand 3	A	650	653	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	39	40	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	59	60	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	398	401	anti-parallel
Strand 3	B	344	345	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	240	246	anti-parallel
Strand 3	B	295	302	anti-parallel
Strand 4	B	320	328	anti-parallel
Strand 5	B	348	350	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	282	first strand
Strand 2	B	426	429	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	485	first strand
Strand 2	B	508	515	anti-parallel
Strand 3	B	444	452	anti-parallel
Strand 4	B	620	624	anti-parallel
Strand 5	B	565	569	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	485	first strand
Strand 2	B	508	515	anti-parallel
Strand 3	B	444	452	anti-parallel
Strand 4	B	627	628	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	472	first strand
Strand 2	B	527	533	anti-parallel
Strand 3	B	546	552	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1379	1384	first strand
Strand 2	B	1362	1368	anti-parallel
Strand 3	B	1425	1433	anti-parallel
Strand 4	B	1461	1463	anti-parallel
Strand 5	B	1484	1490	anti-parallel
Strand 6	B	1465	1467	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1379	1384	first strand
Strand 2	B	1362	1368	anti-parallel
Strand 3	B	1425	1433	anti-parallel
Strand 4	B	1461	1463	anti-parallel
Strand 5	B	1484	1490	anti-parallel
Strand 6	B	1506	1509	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JHK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JHK