Analysis of interatomic Contacts of Structural Units in PDB entry:
8JHO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JHO entry

There are 26 chains in PDB entry 8JHO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 33	VAL 35
A	LYS 37	ARG 134
B	LEU 22	GLY 102
C	ARG 11	LYS 119
D	ARG 26	ALA 121
E	ALA 1	ARG 134
F	ARG 23	GLY 102
G	LYS 13	LYS 118
H	LYS 28	LYS 122
I	A -6	T 333
J	A 11	T 350
K	SER 661	LEU 1322
L	MET 1	LYS 384
M	GLU 7	MET 401
N	LYS 82	SER 579
O	GLU 7	ASP 376
P	GLU 258	ASN 580
a	GLY 33	VAL 35
a	LYS 37	ARG 134
b	VAL 21	GLY 102
c	ARG 11	LYS 119
d	ARG 26	ALA 121
e	LYS 37	ARG 134
f	ARG 23	GLY 102
g	LYS 13	LYS 118
h	LYS 28	LYS 122

There are152 helices in PDB entry 8JHO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	63	75	Right-handed alpha
Helix 3	AA3	A	87	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	25	29	Right-handed 310
Helix 6	AA6	B	30	42	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	94	Right-handed alpha
Helix 9	AA9	C	16	21	Right-handed 310
Helix 10	AB1	C	26	38	Right-handed alpha
Helix 11	AB2	C	45	60	Right-handed alpha
Helix 12	AB3	C	60	73	Right-handed alpha
Helix 13	AB4	C	79	89	Right-handed alpha
Helix 14	AB5	C	90	97	Right-handed alpha
Helix 15	AB6	C	112	116	Right-handed 310
Helix 16	AB7	D	34	46	Right-handed alpha
Helix 17	AB8	D	52	81	Right-handed alpha
Helix 18	AB9	D	88	99	Right-handed alpha
Helix 19	AC1	D	100	103	Right-handed 310
Helix 20	AC2	D	104	121	Right-handed alpha
Helix 21	AC3	E	44	57	Right-handed alpha
Helix 22	AC4	E	63	76	Right-handed alpha
Helix 23	AC5	E	85	114	Right-handed alpha
Helix 24	AC6	E	120	132	Right-handed alpha
Helix 25	AC7	F	30	41	Right-handed alpha
Helix 26	AC8	F	49	76	Right-handed alpha
Helix 27	AC9	F	82	94	Right-handed alpha
Helix 28	AD1	G	16	22	Right-handed alpha
Helix 29	AD2	G	26	37	Right-handed alpha
Helix 30	AD3	G	45	73	Right-handed alpha
Helix 31	AD4	G	79	90	Right-handed alpha
Helix 32	AD5	G	92	97	Right-handed alpha
Helix 33	AD6	G	112	116	Right-handed 310
Helix 34	AD7	H	34	46	Right-handed alpha
Helix 35	AD8	H	52	81	Right-handed alpha
Helix 36	AD9	H	87	99	Right-handed alpha
Helix 37	AE1	H	100	121	Right-handed alpha
Helix 38	AE2	K	662	677	Right-handed alpha
Helix 39	AE3	K	678	694	Right-handed alpha
Helix 40	AE4	K	698	710	Right-handed alpha
Helix 41	AE5	K	715	725	Right-handed alpha
Helix 42	AE6	K	759	764	Right-handed alpha
Helix 43	AE7	K	771	778	Right-handed alpha
Helix 44	AE8	K	785	790	Right-handed alpha
Helix 45	AE9	K	801	840	Right-handed alpha
Helix 46	AF1	K	852	857	Right-handed 310
Helix 47	AF2	K	861	871	Right-handed alpha
Helix 48	AF3	K	872	886	Right-handed alpha
Helix 49	AF4	K	886	928	Right-handed alpha
Helix 50	AF5	K	934	943	Right-handed alpha
Helix 51	AF6	K	944	964	Right-handed alpha
Helix 52	AF7	K	982	999	Right-handed alpha
Helix 53	AF8	K	1003	1022	Right-handed alpha
Helix 54	AF9	K	1025	1033	Right-handed alpha
Helix 55	AG1	K	1141	1164	Right-handed alpha
Helix 56	AG2	K	1164	1174	Right-handed alpha
Helix 57	AG3	K	1178	1184	Right-handed alpha
Helix 58	AG4	K	1202	1216	Right-handed alpha
Helix 59	AG5	K	1220	1233	Right-handed alpha
Helix 60	AG6	K	1236	1240	Right-handed 310
Helix 61	AG7	K	1241	1258	Right-handed alpha
Helix 62	AG8	K	1262	1275	Right-handed alpha
Helix 63	AG9	K	1279	1292	Right-handed alpha
Helix 64	AH1	L	28	32	Right-handed 310
Helix 65	AH2	L	42	55	Right-handed alpha
Helix 66	AH3	L	56	61	Right-handed 310
Helix 67	AH4	L	70	75	Right-handed alpha
Helix 68	AH5	L	79	89	Right-handed alpha
Helix 69	AH6	L	91	95	Right-handed 310
Helix 70	AH7	L	98	104	Right-handed alpha
Helix 71	AH8	L	115	136	Right-handed alpha
Helix 72	AH9	L	164	175	Right-handed alpha
Helix 73	AI1	L	190	197	Right-handed alpha
Helix 74	AI2	L	226	230	Right-handed 310
Helix 75	AI3	L	243	263	Right-handed alpha
Helix 76	AI4	L	272	276	Right-handed 310
Helix 77	AI5	L	287	300	Right-handed alpha
Helix 78	AI6	L	314	329	Right-handed alpha
Helix 79	AI7	L	343	347	Right-handed 310
Helix 80	AI8	L	365	380	Right-handed alpha
Helix 81	AI9	L	381	383	Right-handed 310
Helix 82	AJ1	M	85	89	Right-handed 310
Helix 83	AJ2	M	101	131	Right-handed alpha
Helix 84	AJ3	M	225	241	Right-handed alpha
Helix 85	AJ4	M	254	266	Right-handed alpha
Helix 86	AJ5	M	271	297	Right-handed alpha
Helix 87	AJ6	M	301	316	Right-handed alpha
Helix 88	AJ7	M	327	344	Right-handed alpha
Helix 89	AJ8	M	348	369	Right-handed alpha
Helix 90	AJ9	M	369	374	Right-handed alpha
Helix 91	AK1	M	391	401	Right-handed alpha
Helix 92	AK2	N	100	104	Right-handed 310
Helix 93	AK3	N	120	128	Right-handed alpha
Helix 94	AK4	N	171	175	Right-handed alpha
Helix 95	AK5	N	303	315	Right-handed alpha
Helix 96	AK6	N	318	330	Right-handed alpha
Helix 97	AK7	N	336	343	Right-handed alpha
Helix 98	AK8	N	354	359	Right-handed alpha
Helix 99	AK9	N	382	387	Right-handed alpha
Helix 100	AL1	N	430	434	Right-handed 310
Helix 101	AL2	N	546	578	Right-handed alpha
Helix 102	AL3	O	85	89	Right-handed 310
Helix 103	AL4	O	101	131	Right-handed alpha
Helix 104	AL5	O	225	241	Right-handed alpha
Helix 105	AL6	O	253	269	Right-handed alpha
Helix 106	AL7	O	271	293	Right-handed alpha
Helix 107	AL8	O	302	314	Right-handed alpha
Helix 108	AL9	O	321	326	Right-handed alpha
Helix 109	AM1	O	327	343	Right-handed alpha
Helix 110	AM2	O	349	369	Right-handed alpha
Helix 111	AM3	O	369	374	Right-handed alpha
Helix 112	AM4	P	303	313	Right-handed alpha
Helix 113	AM5	P	315	330	Right-handed alpha
Helix 114	AM6	P	333	337	Right-handed 310
Helix 115	AM7	P	338	345	Right-handed alpha
Helix 116	AM8	P	354	359	Right-handed alpha
Helix 117	AM9	P	544	580	Right-handed alpha
Helix 118	AN1	a	44	55	Right-handed alpha
Helix 119	AN2	a	63	75	Right-handed alpha
Helix 120	AN3	a	85	114	Right-handed alpha
Helix 121	AN4	a	120	132	Right-handed alpha
Helix 122	AN5	b	25	29	Right-handed 310
Helix 123	AN6	b	30	42	Right-handed alpha
Helix 124	AN7	b	49	76	Right-handed alpha
Helix 125	AN8	b	82	94	Right-handed alpha
Helix 126	AN9	c	16	21	Right-handed alpha
Helix 127	AO1	c	26	37	Right-handed alpha
Helix 128	AO2	c	45	73	Right-handed alpha
Helix 129	AO3	c	79	90	Right-handed alpha
Helix 130	AO4	c	90	97	Right-handed alpha
Helix 131	AO5	c	112	116	Right-handed 310
Helix 132	AO6	d	34	46	Right-handed alpha
Helix 133	AO7	d	52	81	Right-handed alpha
Helix 134	AO8	d	87	99	Right-handed alpha
Helix 135	AO9	d	101	121	Right-handed alpha
Helix 136	AP1	e	44	57	Right-handed alpha
Helix 137	AP2	e	63	77	Right-handed alpha
Helix 138	AP3	e	85	114	Right-handed alpha
Helix 139	AP4	e	120	132	Right-handed alpha
Helix 140	AP5	f	30	41	Right-handed alpha
Helix 141	AP6	f	49	76	Right-handed alpha
Helix 142	AP7	f	82	94	Right-handed alpha
Helix 143	AP8	g	16	22	Right-handed alpha
Helix 144	AP9	g	26	36	Right-handed alpha
Helix 145	AQ1	g	45	73	Right-handed alpha
Helix 146	AQ2	g	79	90	Right-handed alpha
Helix 147	AQ3	g	92	97	Right-handed alpha
Helix 148	AQ4	g	112	116	Right-handed 310
Helix 149	AQ5	h	34	46	Right-handed alpha
Helix 150	AQ6	h	52	80	Right-handed alpha
Helix 151	AQ7	h	87	98	Right-handed alpha
Helix 152	AQ8	h	100	121	Right-handed alpha

There are 29 sheets in PDB entry 8JHO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	N	271	274	anti-parallel
Strand 3	N	281	283	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	756	757	first strand
Strand 2	K	782	783	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	975	978	first strand
Strand 2	K	1311	1316	anti-parallel
Strand 3	K	1301	1306	anti-parallel
Strand 4	K	1135	1140	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	233	238	first strand
Strand 2	L	203	210	parallel
Strand 3	L	180	184	parallel
Strand 4	L	266	271	parallel
Strand 5	L	305	309	parallel
Strand 6	L	141	144	parallel
Strand 7	L	21	24	parallel
Strand 8	L	62	66	parallel
Strand 9	N	176	179	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	58	59	first strand
Strand 2	M	37	40	anti-parallel
Strand 3	M	21	32	anti-parallel
Strand 4	M	77	81	anti-parallel
Strand 5	M	90	92	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	58	59	first strand
Strand 2	M	37	40	anti-parallel
Strand 3	M	21	32	anti-parallel
Strand 4	M	13	18	anti-parallel
Strand 5	M	97	99	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	244	246	first strand
Strand 2	M	387	389	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	85	87	first strand
Strand 2	N	93	96	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	365	366	first strand
Strand 2	N	372	373	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	437	439	first strand
Strand 2	N	446	448	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	473	477	first strand
Strand 2	N	489	493	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	505	506	first strand
Strand 2	P	539	543	parallel
Strand 3	N	520	523	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	58	59	first strand
Strand 2	O	37	40	anti-parallel
Strand 3	O	21	32	anti-parallel
Strand 4	O	77	81	anti-parallel
Strand 5	O	90	92	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	58	59	first strand
Strand 2	O	37	40	anti-parallel
Strand 3	O	21	32	anti-parallel
Strand 4	O	13	18	anti-parallel
Strand 5	O	97	99	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	273	274	first strand
Strand 2	P	281	282	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	83	84	first strand
Strand 2	b	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	77	78	first strand
Strand 2	d	50	51	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	100	102	first strand
Strand 2	f	96	98	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	83	84	first strand
Strand 2	f	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	118	119	first strand
Strand 2	f	45	46	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	77	78	first strand
Strand 2	h	50	51	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JHO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JHO