Analysis of interatomic Contacts of Structural Units in PDB entry:
8JHU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JHU entry

There is 1 chain in PDB entry 8JHU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 875
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8JHU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 34Right-handed alpha
Helix 2
AA2
A
70 75Right-handed alpha
Helix 3
AA3
A
94 103Right-handed alpha
Helix 4
AA4
A
136 166Right-handed alpha
Helix 5
AA5
A
170 183Right-handed alpha
Helix 6
AA6
A
194 204Right-handed alpha
Helix 7
AA7
A
204 225Right-handed alpha
Helix 8
AA8
A
234 243Right-handed alpha
Helix 9
AA9
A
267 271Right-handed 310
Helix 10
AB1
A
272 294Right-handed alpha
Helix 11
AB2
A
347 361Right-handed alpha
Helix 12
AB3
A
364 369Right-handed alpha
Helix 13
AB4
A
373 388Right-handed alpha
Helix 14
AB5
A
392 397Right-handed alpha
Helix 15
AB6
A
398 400Right-handed 310
Helix 16
AB7
A
410 424Right-handed alpha
Helix 17
AB8
A
427 439Right-handed alpha
Helix 18
AB9
A
462 472Right-handed alpha
Helix 19
AC1
A
483 488Right-handed 310
Helix 20
AC2
A
489 503Right-handed alpha
Helix 21
AC3
A
511 524Right-handed alpha
Helix 22
AC4
A
527 531Right-handed 310
Helix 23
AC5
A
533 544Right-handed alpha
Helix 24
AC6
A
579 585Right-handed alpha
Helix 25
AC7
A
601 615Right-handed alpha
Helix 26
AC8
A
615 620Right-handed alpha
Helix 27
AC9
A
637 650Right-handed alpha
Helix 28
AD1
A
651 659Right-handed alpha
Helix 29
AD2
A
672 683Right-handed alpha
Helix 30
AD3
A
706 716Right-handed alpha
Helix 31
AD4
A
732 737Right-handed alpha
Helix 32
AD5
A
773 776Right-handed 310
Helix 33
AD6
A
777 786Right-handed alpha
Helix 34
AD7
A
805 809Right-handed 310
Helix 35
AD8
A
814 827Right-handed alpha
Helix 36
AD9
A
839 854Right-handed alpha
Helix 37
AE1
A
856 868Right-handed alpha
Helix 38
AE2
A
870 874Right-handed 310
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There are 3 sheets in PDB entry 8JHU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
3 7parallel
Strand 3
A
446 452parallel
Strand 4
A
475 480parallel
Strand 5
A
505 508parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
82 85anti-parallel
Strand 3
A
110 113parallel
Strand 4
A
119 125anti-parallel
Strand 5
A
132 134anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
699 703first strand
Strand 2
A
629 633parallel
Strand 3
A
590 592parallel
Strand 4
A
719 721parallel
Strand 5
A
743 745parallel
Strand 6
A
766 767parallel
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