Analysis of interatomic Contacts of Structural Units in PDB entry:
8JI0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JI0 entry

There are 2 chains in PDB entry 8JI0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 142	GLY 492
A	GLN 2460	ILE 2616

There are 6 helices in PDB entry 8JI0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	177	188	Right-handed alpha
Helix 2	AA2	B	220	225	Right-handed alpha
Helix 3	AA3	B	294	299	Right-handed alpha
Helix 4	AA4	B	316	320	Right-handed 310
Helix 5	AA5	B	406	411	Right-handed alpha
Helix 6	AA6	B	477	492	Right-handed alpha

There are 11 sheets in PDB entry 8JI0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	152	first strand
Strand 2	B	157	162	anti-parallel
Strand 3	B	167	170	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	201	first strand
Strand 2	B	235	240	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	282	first strand
Strand 2	B	271	274	anti-parallel
Strand 3	B	309	312	anti-parallel
Strand 4	B	326	333	anti-parallel
Strand 5	B	347	351	anti-parallel
Strand 6	B	290	293	anti-parallel
Strand 7	B	284	287	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	383	first strand
Strand 2	B	398	405	anti-parallel
Strand 3	B	424	428	anti-parallel
Strand 4	B	473	476	anti-parallel
Strand 5	B	452	461	anti-parallel
Strand 6	B	444	449	anti-parallel
Strand 7	B	379	383	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2462	2466	first strand
Strand 2	A	2469	2473	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2484	2486	first strand
Strand 2	A	2489	2491	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2502	2507	first strand
Strand 2	A	2510	2515	anti-parallel
Strand 3	A	2518	2519	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2522	2523	first strand
Strand 2	A	2532	2533	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2553	2557	first strand
Strand 2	A	2560	2564	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2573	2577	first strand
Strand 2	A	2580	2584	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2595	2597	first strand
Strand 2	A	2604	2606	anti-parallel
Strand 3	A	2612	2613	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JI0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JI0