Analysis of interatomic Contacts of Structural Units in PDB entry:
8JI1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JI1 entry

There are 2 chains in PDB entry 8JI1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 194
B
 LEU 5PHE 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8JI1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 21Right-handed alpha
Helix 2
AA2
A
40 61Right-handed alpha
Helix 3
AA3
A
80 82Right-handed 310
Helix 4
AA4
A
88 106Right-handed alpha
Helix 5
AA5
A
149 151Right-handed 310
Helix 6
AA6
A
166 171Right-handed alpha
Helix 7
AA7
A
174 194Right-handed alpha
Helix 8
AA8
B
15 21Right-handed alpha
Helix 9
AA9
B
40 59Right-handed alpha
Helix 10
AB1
B
80 82Right-handed 310
Helix 11
AB2
B
88 106Right-handed alpha
Helix 12
AB3
B
149 151Right-handed 310
Helix 13
AB4
B
161 165Right-handed 310
Helix 14
AB5
B
167 174Right-handed alpha
Helix 15
AB6
B
174 198Right-handed alpha
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There are 4 sheets in PDB entry 8JI1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
3 6parallel
Strand 3
A
68 78parallel
Strand 4
A
85 86anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
3 6parallel
Strand 3
A
68 78parallel
Strand 4
A
112 122anti-parallel
Strand 5
A
127 138anti-parallel
Strand 6
A
153 155anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
7 10parallel
Strand 3
B
68 78parallel
Strand 4
B
85 86anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
7 10parallel
Strand 3
B
68 78parallel
Strand 4
B
112 122anti-parallel
Strand 5
B
127 138anti-parallel
Strand 6
B
153 155anti-parallel
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