Analysis of interatomic Contacts of Structural Units in PDB entry:
8JI2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JI2 entry

There are 2 chains in PDB entry 8JI2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2ALA 237
B
 GLY 0ALA 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8JI2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-2 17Right-handed alpha
Helix 2
AA2
A
18 25Right-handed alpha
Helix 3
AA3
A
30 35Right-handed alpha
Helix 4
AA4
A
36 40Right-handed 310
Helix 5
AA5
A
41 55Right-handed alpha
Helix 6
AA6
A
63 77Right-handed alpha
Helix 7
AA7
A
78 90Right-handed alpha
Helix 8
AA8
A
98 106Right-handed alpha
Helix 9
AA9
A
107 109Right-handed 310
Helix 10
AB1
A
110 125Right-handed alpha
Helix 11
AB2
A
128 162Right-handed alpha
Helix 12
AB3
A
169 178Right-handed alpha
Helix 13
AB4
A
185 192Right-handed alpha
Helix 14
AB5
A
196 227Right-handed alpha
Helix 15
AB6
B
1 16Right-handed alpha
Helix 16
AB7
B
18 26Right-handed alpha
Helix 17
AB8
B
30 35Right-handed alpha
Helix 18
AB9
B
36 40Right-handed 310
Helix 19
AC1
B
41 55Right-handed alpha
Helix 20
AC2
B
63 77Right-handed alpha
Helix 21
AC3
B
78 90Right-handed alpha
Helix 22
AC4
B
98 106Right-handed alpha
Helix 23
AC5
B
107 109Right-handed 310
Helix 24
AC6
B
110 125Right-handed alpha
Helix 25
AC7
B
128 162Right-handed alpha
Helix 26
AC8
B
169 177Right-handed alpha
Helix 27
AC9
B
186 192Right-handed alpha
Helix 28
AD1
B
196 228Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8JI2.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
B
95 97anti-parallel
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