Analysis of interatomic Contacts of Structural Units in PDB entry:
8JI8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JI8 entry

There are 4 chains in PDB entry 8JI8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 680
B	MET 1	THR 680
C	MET 1	THR 680
D	MET 1	THR 680

There are137 helices in PDB entry 8JI8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	9	Right-handed alpha
Helix 2	AA2	A	10	12	Right-handed 310
Helix 3	AA3	A	17	21	Right-handed 310
Helix 4	AA4	A	30	34	Right-handed 310
Helix 5	AA5	A	38	40	Right-handed 310
Helix 6	AA6	A	41	52	Right-handed alpha
Helix 7	AA7	A	67	72	Right-handed alpha
Helix 8	AA8	A	83	100	Right-handed alpha
Helix 9	AA9	A	102	115	Right-handed alpha
Helix 10	AB1	A	118	133	Right-handed alpha
Helix 11	AB2	A	134	137	Right-handed 310
Helix 12	AB3	A	143	148	Right-handed alpha
Helix 13	AB4	A	149	152	Right-handed 310
Helix 14	AB5	A	156	168	Right-handed alpha
Helix 15	AB6	A	169	173	Right-handed 310
Helix 16	AB7	A	188	192	Right-handed 310
Helix 17	AB8	A	193	198	Right-handed alpha
Helix 18	AB9	A	199	213	Right-handed alpha
Helix 19	AC1	A	218	223	Right-handed alpha
Helix 20	AC2	A	226	248	Right-handed alpha
Helix 21	AC3	A	303	321	Right-handed alpha
Helix 22	AC4	A	337	348	Right-handed alpha
Helix 23	AC5	A	354	359	Right-handed alpha
Helix 24	AC6	A	360	371	Right-handed alpha
Helix 25	AC7	A	384	388	Right-handed 310
Helix 26	AC8	A	391	395	Right-handed 310
Helix 27	AC9	A	396	414	Right-handed alpha
Helix 28	AD1	A	420	425	Right-handed alpha
Helix 29	AD2	A	458	461	Right-handed 310
Helix 30	AD3	A	515	520	Right-handed alpha
Helix 31	AD4	A	521	523	Right-handed 310
Helix 32	AD5	A	545	547	Right-handed 310
Helix 33	AD6	A	552	557	Right-handed alpha
Helix 34	AD7	A	585	587	Right-handed 310
Helix 35	AD8	A	607	611	Right-handed alpha
Helix 36	AD9	A	654	659	Right-handed alpha
Helix 37	AE1	B	2	9	Right-handed alpha
Helix 38	AE2	B	10	12	Right-handed 310
Helix 39	AE3	B	17	21	Right-handed 310
Helix 40	AE4	B	30	34	Right-handed 310
Helix 41	AE5	B	38	40	Right-handed 310
Helix 42	AE6	B	41	51	Right-handed alpha
Helix 43	AE7	B	67	72	Right-handed alpha
Helix 44	AE8	B	83	100	Right-handed alpha
Helix 45	AE9	B	103	115	Right-handed alpha
Helix 46	AF1	B	118	131	Right-handed alpha
Helix 47	AF2	B	133	137	Right-handed 310
Helix 48	AF3	B	143	148	Right-handed alpha
Helix 49	AF4	B	149	152	Right-handed 310
Helix 50	AF5	B	156	168	Right-handed alpha
Helix 51	AF6	B	188	192	Right-handed 310
Helix 52	AF7	B	193	198	Right-handed alpha
Helix 53	AF8	B	199	213	Right-handed alpha
Helix 54	AF9	B	218	223	Right-handed alpha
Helix 55	AG1	B	226	248	Right-handed alpha
Helix 56	AG2	B	303	321	Right-handed alpha
Helix 57	AG3	B	337	348	Right-handed alpha
Helix 58	AG4	B	354	359	Right-handed alpha
Helix 59	AG5	B	360	371	Right-handed alpha
Helix 60	AG6	B	384	388	Right-handed 310
Helix 61	AG7	B	391	395	Right-handed 310
Helix 62	AG8	B	396	414	Right-handed alpha
Helix 63	AG9	B	420	425	Right-handed alpha
Helix 64	AH1	B	458	461	Right-handed 310
Helix 65	AH2	B	515	520	Right-handed alpha
Helix 66	AH3	B	545	547	Right-handed 310
Helix 67	AH4	B	585	587	Right-handed 310
Helix 68	AH5	B	607	611	Right-handed alpha
Helix 69	AH6	B	654	659	Right-handed alpha
Helix 70	AH7	C	2	8	Right-handed alpha
Helix 71	AH8	C	9	12	Right-handed 310
Helix 72	AH9	C	30	34	Right-handed 310
Helix 73	AI1	C	38	40	Right-handed 310
Helix 74	AI2	C	41	51	Right-handed alpha
Helix 75	AI3	C	67	72	Right-handed alpha
Helix 76	AI4	C	83	99	Right-handed alpha
Helix 77	AI5	C	102	115	Right-handed alpha
Helix 78	AI6	C	118	133	Right-handed alpha
Helix 79	AI7	C	134	137	Right-handed 310
Helix 80	AI8	C	143	148	Right-handed alpha
Helix 81	AI9	C	149	152	Right-handed 310
Helix 82	AJ1	C	156	168	Right-handed alpha
Helix 83	AJ2	C	169	173	Right-handed 310
Helix 84	AJ3	C	188	192	Right-handed 310
Helix 85	AJ4	C	193	198	Right-handed alpha
Helix 86	AJ5	C	199	213	Right-handed alpha
Helix 87	AJ6	C	218	223	Right-handed alpha
Helix 88	AJ7	C	226	248	Right-handed alpha
Helix 89	AJ8	C	303	321	Right-handed alpha
Helix 90	AJ9	C	337	348	Right-handed alpha
Helix 91	AK1	C	354	359	Right-handed alpha
Helix 92	AK2	C	360	371	Right-handed alpha
Helix 93	AK3	C	384	388	Right-handed 310
Helix 94	AK4	C	391	395	Right-handed 310
Helix 95	AK5	C	396	414	Right-handed alpha
Helix 96	AK6	C	420	425	Right-handed alpha
Helix 97	AK7	C	458	461	Right-handed 310
Helix 98	AK8	C	515	523	Right-handed alpha
Helix 99	AK9	C	545	547	Right-handed 310
Helix 100	AL1	C	552	556	Right-handed 310
Helix 101	AL2	C	585	587	Right-handed 310
Helix 102	AL3	C	607	611	Right-handed alpha
Helix 103	AL4	C	654	658	Right-handed 310
Helix 104	AL5	D	2	9	Right-handed alpha
Helix 105	AL6	D	10	12	Right-handed 310
Helix 106	AL7	D	30	34	Right-handed 310
Helix 107	AL8	D	42	47	Right-handed alpha
Helix 108	AL9	D	67	72	Right-handed alpha
Helix 109	AM1	D	83	99	Right-handed alpha
Helix 110	AM2	D	102	115	Right-handed alpha
Helix 111	AM3	D	118	133	Right-handed alpha
Helix 112	AM4	D	134	137	Right-handed 310
Helix 113	AM5	D	143	148	Right-handed alpha
Helix 114	AM6	D	149	152	Right-handed 310
Helix 115	AM7	D	155	168	Right-handed alpha
Helix 116	AM8	D	169	173	Right-handed 310
Helix 117	AM9	D	188	192	Right-handed 310
Helix 118	AN1	D	193	198	Right-handed alpha
Helix 119	AN2	D	199	213	Right-handed alpha
Helix 120	AN3	D	218	223	Right-handed alpha
Helix 121	AN4	D	226	248	Right-handed alpha
Helix 122	AN5	D	303	321	Right-handed alpha
Helix 123	AN6	D	337	348	Right-handed alpha
Helix 124	AN7	D	354	359	Right-handed alpha
Helix 125	AN8	D	360	370	Right-handed alpha
Helix 126	AN9	D	384	388	Right-handed 310
Helix 127	AO1	D	391	395	Right-handed 310
Helix 128	AO2	D	396	414	Right-handed alpha
Helix 129	AO3	D	420	425	Right-handed alpha
Helix 130	AO4	D	458	461	Right-handed 310
Helix 131	AO5	D	515	520	Right-handed alpha
Helix 132	AO6	D	521	523	Right-handed 310
Helix 133	AO7	D	545	547	Right-handed 310
Helix 134	AO8	D	552	556	Right-handed 310
Helix 135	AO9	D	585	587	Right-handed 310
Helix 136	AP1	D	607	611	Right-handed alpha
Helix 137	AP2	D	654	659	Right-handed alpha

There are 28 sheets in PDB entry 8JI8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	28	first strand
Strand 2	A	55	58	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	177	first strand
Strand 2	A	470	478	parallel
Strand 3	A	445	456	anti-parallel
Strand 4	A	663	678	parallel
Strand 5	A	597	606	anti-parallel
Strand 6	A	495	505	anti-parallel
Strand 7	A	524	533	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	279	280	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	295	first strand
Strand 2	A	300	302	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	324	first strand
Strand 2	A	330	332	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	438	first strand
Strand 2	A	481	489	anti-parallel
Strand 3	A	539	543	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	551	first strand
Strand 2	A	582	583	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	57	58	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	177	first strand
Strand 2	B	470	478	parallel
Strand 3	B	445	456	anti-parallel
Strand 4	B	663	676	parallel
Strand 5	B	596	606	anti-parallel
Strand 6	B	495	505	anti-parallel
Strand 7	B	524	533	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	274	first strand
Strand 2	B	279	280	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	295	first strand
Strand 2	B	300	302	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	324	first strand
Strand 2	B	330	332	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	437	first strand
Strand 2	B	482	488	anti-parallel
Strand 3	B	537	543	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	551	first strand
Strand 2	B	582	583	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	57	58	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	177	first strand
Strand 2	C	470	478	parallel
Strand 3	C	445	456	anti-parallel
Strand 4	C	663	677	parallel
Strand 5	C	596	606	anti-parallel
Strand 6	C	495	505	anti-parallel
Strand 7	C	524	533	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	274	first strand
Strand 2	C	279	280	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	295	first strand
Strand 2	C	300	302	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	324	first strand
Strand 2	C	330	332	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	438	first strand
Strand 2	C	481	488	anti-parallel
Strand 3	C	537	543	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	550	551	first strand
Strand 2	C	582	583	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	28	first strand
Strand 2	D	55	58	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	177	first strand
Strand 2	D	470	478	parallel
Strand 3	D	445	456	anti-parallel
Strand 4	D	663	678	parallel
Strand 5	D	596	606	anti-parallel
Strand 6	D	495	505	anti-parallel
Strand 7	D	524	533	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	274	first strand
Strand 2	D	279	280	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	295	first strand
Strand 2	D	300	302	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	322	324	first strand
Strand 2	D	330	332	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	438	first strand
Strand 2	D	481	488	anti-parallel
Strand 3	D	537	543	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	550	551	first strand
Strand 2	D	582	583	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JI8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JI8