Analysis of interatomic Contacts of Structural Units in PDB entry:
8JI9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JI9 entry

There are 4 chains in PDB entry 8JI9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 6LEU 344
D
 LYS 3ARG 116
A
 MET 6LEU 344
B
 LYS 2ARG 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8JI9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
45 57Right-handed alpha
Helix 2
AA2
C
58 61Right-handed 310
Helix 3
AA3
C
70 76Right-handed alpha
Helix 4
AA4
C
149 156Right-handed alpha
Helix 5
AA5
C
224 232Right-handed alpha
Helix 6
AA6
C
236 251Right-handed alpha
Helix 7
AA7
C
294 313Right-handed alpha
Helix 8
AA8
C
313 318Right-handed alpha
Helix 9
AA9
C
332 342Right-handed alpha
Helix 10
AB1
D
14 24Right-handed alpha
Helix 11
AB2
D
27 47Right-handed alpha
Helix 12
AB3
D
51 63Right-handed alpha
Helix 13
AB4
D
68 74Right-handed alpha
Helix 14
AB5
D
74 81Right-handed alpha
Helix 15
AB6
D
82 87Right-handed alpha
Helix 16
AB7
D
89 101Right-handed alpha
Helix 17
AB8
D
103 114Right-handed alpha
Helix 18
AB9
A
45 57Right-handed alpha
Helix 19
AC1
A
58 61Right-handed 310
Helix 20
AC2
A
70 81Right-handed alpha
Helix 21
AC3
A
86 100Right-handed alpha
Helix 22
AC4
A
109 122Right-handed alpha
Helix 23
AC5
A
131 142Right-handed alpha
Helix 24
AC6
A
145 156Right-handed alpha
Helix 25
AC7
A
162 166Right-handed 310
Helix 26
AC8
A
224 232Right-handed alpha
Helix 27
AC9
A
236 251Right-handed alpha
Helix 28
AD1
A
294 314Right-handed alpha
Helix 29
AD2
A
332 342Right-handed alpha
Helix 30
AD3
B
14 24Right-handed alpha
Helix 31
AD4
B
27 47Right-handed alpha
Helix 32
AD5
B
51 63Right-handed alpha
Helix 33
AD6
B
68 74Right-handed alpha
Helix 34
AD7
B
74 81Right-handed alpha
Helix 35
AD8
B
82 88Right-handed alpha
Helix 36
AD9
B
89 101Right-handed alpha
Helix 37
AE1
B
103 114Right-handed alpha
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There are 5 sheets in PDB entry 8JI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 35first strand
Strand 2
C
40 44anti-parallel
Strand 3
C
176 178anti-parallel
Strand 4
C
213 223anti-parallel
Strand 5
C
171 173anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 35first strand
Strand 2
C
40 44anti-parallel
Strand 3
C
176 178anti-parallel
Strand 4
C
213 223anti-parallel
Strand 5
C
8 19anti-parallel
Strand 6
C
266 275anti-parallel
Strand 7
C
319 325anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
39 44anti-parallel
Strand 3
A
176 178anti-parallel
Strand 4
A
213 223anti-parallel
Strand 5
A
171 173anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
39 44anti-parallel
Strand 3
A
176 178anti-parallel
Strand 4
A
213 223anti-parallel
Strand 5
A
8 19anti-parallel
Strand 6
A
268 275anti-parallel
Strand 7
A
319 325anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
106 108anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il