Analysis of interatomic Contacts of Structural Units in PDB entry:
8JIA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JIA entry

There are 5 chains in PDB entry 8JIA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 227
B
 MET 1VAL 225
E
 ALA 45TYR 385
D
 MET 1VAL 295
C
 MET 1VAL 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8JIA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 50Right-handed alpha
Helix 2
AA2
A
75 81Right-handed alpha
Helix 3
AA3
A
97 105Right-handed alpha
Helix 4
AA4
A
115 120Right-handed alpha
Helix 5
AA5
A
123 128Right-handed alpha
Helix 6
AA6
A
141 154Right-handed alpha
Helix 7
AA7
A
175 187Right-handed alpha
Helix 8
AA8
A
201 206Right-handed alpha
Helix 9
AA9
B
38 41Right-handed 310
Helix 10
AB1
B
42 51Right-handed alpha
Helix 11
AB2
B
97 103Right-handed alpha
Helix 12
AB3
B
119 125Right-handed alpha
Helix 13
AB4
B
141 153Right-handed alpha
Helix 14
AB5
B
171 187Right-handed alpha
Helix 15
AB6
E
48 110Right-handed alpha
Helix 16
AB7
E
118 122Right-handed 310
Helix 17
AB8
E
127 195Right-handed alpha
Helix 18
AB9
E
197 202Right-handed alpha
Helix 19
AC1
E
320 325Right-handed alpha
Helix 20
AC2
D
3 17Right-handed alpha
Helix 21
AC3
D
17 50Right-handed alpha
Helix 22
AC4
D
75 85Right-handed alpha
Helix 23
AC5
D
98 110Right-handed alpha
Helix 24
AC6
D
118 122Right-handed 310
Helix 25
AC7
D
136 141Right-handed alpha
Helix 26
AC8
D
157 163Right-handed alpha
Helix 27
AC9
D
164 190Right-handed alpha
Helix 28
AD1
D
190 196Right-handed alpha
Helix 29
AD2
D
199 204Right-handed alpha
Helix 30
AD3
D
213 244Right-handed alpha
Helix 31
AD4
D
247 254Right-handed alpha
Helix 32
AD5
D
264 271Right-handed alpha
Helix 33
AD6
D
271 285Right-handed alpha
Helix 34
AD7
D
288 293Right-handed alpha
Helix 35
AD8
C
9 17Right-handed alpha
Helix 36
AD9
C
17 49Right-handed alpha
Helix 37
AE1
C
63 69Right-handed alpha
Helix 38
AE2
C
75 86Right-handed alpha
Helix 39
AE3
C
99 103Right-handed 310
Helix 40
AE4
C
105 110Right-handed alpha
Helix 41
AE5
C
136 143Right-handed alpha
Helix 42
AE6
C
161 199Right-handed alpha
Helix 43
AE7
C
202 210Right-handed alpha
Helix 44
AE8
C
212 247Right-handed alpha
Helix 45
AE9
C
252 257Right-handed alpha
Helix 46
AF1
C
271 287Right-handed alpha
Helix 47
AF2
C
288 295Right-handed alpha
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There are 6 sheets in PDB entry 8JIA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
58 60anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
160 164parallel
Strand 3
A
193 195parallel
Strand 4
A
33 35parallel
Strand 5
A
208 212parallel
Strand 6
A
217 221anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 9first strand
Strand 2
B
58 62anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 86first strand
Strand 2
B
160 163parallel
Strand 3
B
191 193parallel
Strand 4
B
32 34parallel
Strand 5
B
208 209parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 60first strand
Strand 2
C
152 153anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 94first strand
Strand 2
C
128 130anti-parallel
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