Analysis of interatomic Contacts of Structural Units in PDB entry:
8JIG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JIG entry

There are 2 chains in PDB entry 8JIG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 414HIS 619
B
 PRO 414HIS 619
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8JIG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
432 440Right-handed alpha
Helix 2
AA2
A
502 512Right-handed alpha
Helix 3
AA3
A
526 530Right-handed 310
Helix 4
AA4
A
540 545Right-handed 310
Helix 5
AA5
A
591 602Right-handed alpha
Helix 6
AA6
A
610 617Right-handed alpha
Helix 7
AA7
B
432 440Right-handed alpha
Helix 8
AA8
B
502 512Right-handed alpha
Helix 9
AA9
B
526 530Right-handed 310
Helix 10
AB1
B
540 545Right-handed 310
Helix 11
AB2
B
591 602Right-handed alpha
Helix 12
AB3
B
610 617Right-handed alpha
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There are 4 sheets in PDB entry 8JIG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 451first strand
Strand 2
A
457 462anti-parallel
Strand 3
A
533 538parallel
Strand 4
A
553 568anti-parallel
Strand 5
A
522 523anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 479first strand
Strand 2
A
574 582anti-parallel
Strand 3
A
553 568anti-parallel
Strand 4
A
429 430anti-parallel
Strand 5
A
605 606parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
429 430first strand
Strand 2
B
553 568anti-parallel
Strand 3
B
574 582anti-parallel
Strand 4
B
475 479anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
449 451first strand
Strand 2
B
457 462anti-parallel
Strand 3
B
533 538parallel
Strand 4
B
553 568anti-parallel
Strand 5
B
522 523anti-parallel
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