Analysis of interatomic Contacts of Structural Units in PDB entry:
8JIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JIJ entry

There are 2 chains in PDB entry 8JIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 62HIS 308
A
 PHE 310HIS 481
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8JIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 101Right-handed alpha
Helix 2
AA2
A
112 121Right-handed 310
Helix 3
AA3
A
139 154Right-handed alpha
Helix 4
AA4
A
168 184Right-handed alpha
Helix 5
AA5
A
196 207Right-handed alpha
Helix 6
AA6
A
222 232Right-handed alpha
Helix 7
AA7
A
254 264Right-handed alpha
Helix 8
AA8
A
268 270Right-handed 310
Helix 9
AA9
A
280 285Right-handed alpha
Helix 10
AB1
A
286 288Right-handed 310
Helix 11
AB2
A
324 328Right-handed alpha
Helix 12
AB3
A
351 389Right-handed alpha
Helix 13
AB4
A
409 416Right-handed alpha
Helix 14
AB5
A
434 450Right-handed alpha
Helix 15
AB6
A
463 468Right-handed alpha
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There are 3 sheets in PDB entry 8JIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 166first strand
Strand 2
A
318 323anti-parallel
Strand 3
A
302 306anti-parallel
Strand 4
A
272 277parallel
Strand 5
A
238 243parallel
Strand 6
A
188 192parallel
Strand 7
A
210 213parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
339 341anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 395first strand
Strand 2
A
401 405anti-parallel
Strand 3
A
424 428anti-parallel
Strand 4
A
419 421anti-parallel
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