Analysis of interatomic Contacts of Structural Units in PDB entry:
8JIL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JIL entry

There are 5 chains in PDB entry 8JIL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 1	ASN 340
C	THR 6	ARG 62
D	GLY 2	PHE 354
S	VAL 2	LEU 247
A	PHE 10	SER 297

There are 29 helices in PDB entry 8JIL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	1	25	Right-handed alpha
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	C	7	23	Right-handed alpha
Helix 4	AA4	C	29	44	Right-handed alpha
Helix 5	AA5	D	11	27	Right-handed alpha
Helix 6	AA6	D	45	53	Right-handed alpha
Helix 7	AA7	D	211	216	Right-handed 310
Helix 8	AA8	D	241	254	Right-handed alpha
Helix 9	AA9	D	255	260	Right-handed 310
Helix 10	AB1	D	270	281	Right-handed alpha
Helix 11	AB2	D	295	309	Right-handed alpha
Helix 12	AB3	D	329	351	Right-handed alpha
Helix 13	AB4	S	28	32	Right-handed 310
Helix 14	AB5	A	25	55	Right-handed alpha
Helix 15	AB6	A	62	79	Right-handed alpha
Helix 16	AB7	A	79	89	Right-handed alpha
Helix 17	AB8	A	97	114	Right-handed alpha
Helix 18	AB9	A	115	120	Right-handed alpha
Helix 19	AC1	A	120	130	Right-handed alpha
Helix 20	AC2	A	135	139	Right-handed 310
Helix 21	AC3	A	144	158	Right-handed alpha
Helix 22	AC4	A	159	163	Right-handed 310
Helix 23	AC5	A	187	215	Right-handed alpha
Helix 24	AC6	A	223	261	Right-handed alpha
Helix 25	AC7	A	265	270	Right-handed 310
Helix 26	AC8	A	271	280	Right-handed alpha
Helix 27	AC9	A	281	283	Right-handed 310
Helix 28	AD1	A	284	290	Right-handed alpha
Helix 29	AD2	A	290	295	Right-handed alpha

There are 13 sheets in PDB entry 8JIL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	176	181	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	207	210	anti-parallel
Strand 4	B	220	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	306	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	190	first strand
Strand 2	D	195	200	anti-parallel
Strand 3	D	34	40	parallel
Strand 4	D	220	226	parallel
Strand 5	D	263	269	parallel
Strand 6	D	319	323	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	15	25	anti-parallel
Strand 3	S	78	85	anti-parallel
Strand 4	S	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	46	51	anti-parallel
Strand 6	S	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	146	148	first strand
Strand 2	S	243	246	parallel
Strand 3	S	226	231	anti-parallel
Strand 4	S	174	179	anti-parallel
Strand 5	S	186	190	anti-parallel
Strand 6	S	194	195	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	155	160	first strand
Strand 2	S	211	216	anti-parallel
Strand 3	S	203	208	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	17	19	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JIL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JIL