Analysis of interatomic Contacts of Structural Units in PDB entry:
8JIN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JIN entry

There are 3 chains in PDB entry 8JIN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	VAL 3	SER 251
B	GLU 1	SER 260
A	PRO 330	LYS 528

There are 7 helices in PDB entry 8JIN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	230	235	Right-handed alpha
Helix 2	AA2	B	239	246	Right-handed alpha
Helix 3	AA3	A	337	341	Right-handed 310
Helix 4	AA4	A	367	371	Right-handed 310
Helix 5	AA5	A	385	390	Right-handed 310
Helix 6	AA6	A	405	410	Right-handed 310
Helix 7	AA7	A	416	421	Right-handed alpha

There are 14 sheets in PDB entry 8JIN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	11	12	first strand
Strand 2	P	107	108	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	18	23	first strand
Strand 2	P	71	76	anti-parallel
Strand 3	P	63	68	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	46	49	first strand
Strand 2	P	36	39	anti-parallel
Strand 3	P	86	88	anti-parallel
Strand 4	P	104	105	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	90	93	first strand
Strand 2	P	97	100	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	192	197	first strand
Strand 2	P	202	208	anti-parallel
Strand 3	P	141	149	anti-parallel
Strand 4	P	127	131	anti-parallel
Strand 5	P	242	243	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	158	163	first strand
Strand 2	P	169	175	anti-parallel
Strand 3	P	182	184	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	222	223	first strand
Strand 2	P	238	240	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	99	105	parallel
Strand 3	B	84	90	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	45	49	anti-parallel
Strand 6	B	53	54	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	29	first strand
Strand 2	B	68	74	anti-parallel
Strand 3	B	64	66	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	140	147	anti-parallel
Strand 3	B	203	209	anti-parallel
Strand 4	B	193	197	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	185	first strand
Strand 2	B	167	174	anti-parallel
Strand 3	B	155	163	anti-parallel
Strand 4	B	218	226	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	394	403	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JIN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JIN