Analysis of interatomic Contacts of Structural Units in PDB entry:
8JIP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JIP entry

There are 6 chains in PDB entry 8JIP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	VAL 30	GLU 423
A	THR 4	LEU 361
P	HIS 1	GLY 29
B	GLU 3	ASN 340
G	ALA 7	ARG 62
N	GLN 1	VAL 126

There are 34 helices in PDB entry 8JIP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	31	51	Right-handed alpha
Helix 2	AA2	R	89	94	Right-handed alpha
Helix 3	AA3	R	139	169	Right-handed alpha
Helix 4	AA4	R	174	204	Right-handed alpha
Helix 5	AA5	R	213	222	Right-handed alpha
Helix 6	AA6	R	225	232	Right-handed alpha
Helix 7	AA7	R	232	257	Right-handed alpha
Helix 8	AA8	R	261	291	Right-handed alpha
Helix 9	AA9	R	294	298	Right-handed 310
Helix 10	AB1	R	302	326	Right-handed alpha
Helix 11	AB2	R	327	336	Right-handed alpha
Helix 12	AB3	R	344	349	Right-handed alpha
Helix 13	AB4	R	355	361	Right-handed alpha
Helix 14	AB5	R	362	366	Right-handed 310
Helix 15	AB6	R	377	402	Right-handed alpha
Helix 16	AB7	R	406	421	Right-handed alpha
Helix 17	AB8	A	5	31	Right-handed alpha
Helix 18	AB9	A	45	52	Right-handed alpha
Helix 19	AC1	A	53	57	Right-handed 310
Helix 20	AC2	A	210	216	Right-handed 310
Helix 21	AC3	A	229	245	Right-handed alpha
Helix 22	AC4	A	247	251	Right-handed 310
Helix 23	AC5	A	260	270	Right-handed alpha
Helix 24	AC6	A	281	285	Right-handed 310
Helix 25	AC7	A	298	318	Right-handed alpha
Helix 26	AC8	A	337	356	Right-handed alpha
Helix 27	AC9	A	357	359	Right-handed 310
Helix 28	AD1	P	3	27	Right-handed alpha
Helix 29	AD2	B	4	26	Right-handed alpha
Helix 30	AD3	B	29	34	Right-handed alpha
Helix 31	AD4	G	8	22	Right-handed alpha
Helix 32	AD5	G	29	42	Right-handed alpha
Helix 33	AD6	N	28	32	Right-handed 310
Helix 34	AD7	N	87	91	Right-handed 310

There are 13 sheets in PDB entry 8JIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	79	81	first strand
Strand 2	R	102	104	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	190	191	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	33	39	parallel
Strand 4	A	220	226	parallel
Strand 5	A	254	259	parallel
Strand 6	A	326	329	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	81	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	178	181	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	284	287	anti-parallel
Strand 3	B	296	298	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	21	25	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	122	125	parallel
Strand 3	N	93	97	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	71	73	first strand
Strand 2	N	78	80	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JIP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JIP