Analysis of interatomic Contacts of Structural Units in PDB entry:
8JIQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JIQ entry

There are 6 chains in PDB entry 8JIQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	LEU 394
B	GLN 9	ASN 340
C	VAL 16	ARG 62
E	HIS 1	THR 29
N	GLN 1	SER 128
R	GLN 27	TRP 418

There are 31 helices in PDB entry 8JIQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	38	Right-handed alpha
Helix 2	AA2	A	235	241	Right-handed 310
Helix 3	AA3	A	264	278	Right-handed alpha
Helix 4	AA4	A	293	304	Right-handed alpha
Helix 5	AA5	A	307	312	Right-handed alpha
Helix 6	AA6	A	313	316	Right-handed 310
Helix 7	AA7	A	331	351	Right-handed alpha
Helix 8	AA8	A	370	391	Right-handed alpha
Helix 9	AA9	B	11	26	Right-handed alpha
Helix 10	AB1	B	29	34	Right-handed alpha
Helix 11	AB2	C	17	23	Right-handed alpha
Helix 12	AB3	C	29	44	Right-handed alpha
Helix 13	AB4	C	45	48	Right-handed 310
Helix 14	AB5	C	55	59	Right-handed 310
Helix 15	AB6	E	2	29	Right-handed alpha
Helix 16	AB7	N	28	32	Right-handed 310
Helix 17	AB8	N	87	91	Right-handed 310
Helix 18	AB9	R	28	50	Right-handed alpha
Helix 19	AC1	R	85	89	Right-handed 310
Helix 20	AC2	R	124	131	Right-handed 310
Helix 21	AC3	R	133	164	Right-handed alpha
Helix 22	AC4	R	171	203	Right-handed alpha
Helix 23	AC5	R	217	255	Right-handed alpha
Helix 24	AC6	R	263	277	Right-handed alpha
Helix 25	AC7	R	278	290	Right-handed alpha
Helix 26	AC8	R	301	335	Right-handed alpha
Helix 27	AC9	R	344	353	Right-handed alpha
Helix 28	AD1	R	354	359	Right-handed alpha
Helix 29	AD2	R	361	368	Right-handed alpha
Helix 30	AD3	R	378	402	Right-handed alpha
Helix 31	AD4	R	404	418	Right-handed alpha

There are 12 sheets in PDB entry 8JIQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	217	222	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	360	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	337	339	anti-parallel
Strand 3	B	327	329	anti-parallel
Strand 4	B	318	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	165	169	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	8	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	97	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	59	60	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	57	58	first strand
Strand 2	R	71	72	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	77	80	first strand
Strand 2	R	95	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JIQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JIQ