Analysis of interatomic Contacts of Structural Units in PDB entry:
8JIT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JIT entry

There are 6 chains in PDB entry 8JIT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	LEU 378
P	HIS 1	GLY 29
B	SER 2	ASN 340
C	ALA 7	ARG 62
N	GLN 1	SER 128
R	GLN 27	GLY 421

There are 33 helices in PDB entry 8JIT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	34	Right-handed alpha
Helix 2	AA2	A	46	50	Right-handed 310
Helix 3	AA3	A	217	222	Right-handed 310
Helix 4	AA4	A	248	262	Right-handed alpha
Helix 5	AA5	A	278	282	Right-handed 310
Helix 6	AA6	A	283	288	Right-handed alpha
Helix 7	AA7	A	291	296	Right-handed alpha
Helix 8	AA8	A	297	302	Right-handed 310
Helix 9	AA9	A	315	336	Right-handed alpha
Helix 10	AB1	A	351	375	Right-handed alpha
Helix 11	AB2	P	2	29	Right-handed alpha
Helix 12	AB3	B	4	26	Right-handed alpha
Helix 13	AB4	B	29	34	Right-handed alpha
Helix 14	AB5	B	256	258	Right-handed 310
Helix 15	AB6	C	8	21	Right-handed alpha
Helix 16	AB7	C	29	44	Right-handed alpha
Helix 17	AB8	N	28	32	Right-handed 310
Helix 18	AB9	N	62	65	Right-handed 310
Helix 19	AC1	N	87	91	Right-handed 310
Helix 20	AC2	R	28	49	Right-handed alpha
Helix 21	AC3	R	87	91	Right-handed 310
Helix 22	AC4	R	126	165	Right-handed alpha
Helix 23	AC5	R	171	202	Right-handed alpha
Helix 24	AC6	R	208	217	Right-handed alpha
Helix 25	AC7	R	220	255	Right-handed alpha
Helix 26	AC8	R	263	272	Right-handed alpha
Helix 27	AC9	R	273	289	Right-handed alpha
Helix 28	AD1	R	300	303	Right-handed 310
Helix 29	AD2	R	304	317	Right-handed alpha
Helix 30	AD3	R	318	334	Right-handed alpha
Helix 31	AD4	R	343	354	Right-handed alpha
Helix 32	AD5	R	374	402	Right-handed alpha
Helix 33	AD6	R	404	420	Right-handed alpha

There are 11 sheets in PDB entry 8JIT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	198	first strand
Strand 2	A	201	207	anti-parallel
Strand 3	A	35	41	parallel
Strand 4	A	227	233	parallel
Strand 5	A	270	276	parallel
Strand 6	A	343	347	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	81	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	156	159	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	217	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	307	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	75	80	first strand
Strand 2	R	95	100	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JIT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JIT