Analysis of interatomic Contacts of Structural Units in PDB entry:
8JIX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JIX entry

There is 1 chain in PDB entry 8JIX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2ARG 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8JIX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
21 33Right-handed alpha
Helix 3
AA3
A
43 54Right-handed alpha
Helix 4
AA4
A
81 90Right-handed alpha
Helix 5
AA5
A
109 125Right-handed alpha
Helix 6
AA6
A
167 173Right-handed alpha
Helix 7
AA7
A
183 197Right-handed alpha
Helix 8
AA8
A
208 217Right-handed alpha
Helix 9
AA9
A
228 232Right-handed 310
Helix 10
AB1
A
269 278Right-handed alpha
Helix 11
AB2
A
300 304Right-handed 310
Helix 12
AB3
A
305 316Right-handed alpha
Helix 13
AB4
A
328 335Right-handed 310
Helix 14
AB5
A
345 358Right-handed alpha
Helix 15
AB6
A
362 372Right-handed alpha
Helix 16
AB7
A
379 383Right-handed 310
Helix 17
AB8
A
386 390Right-handed 310
Helix 18
AB9
A
416 421Right-handed 310
Helix 19
AC1
A
422 434Right-handed alpha
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There are 5 sheets in PDB entry 8JIX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
129 133parallel
Strand 3
A
99 103parallel
Strand 4
A
37 41parallel
Strand 5
A
76 80parallel
Strand 6
A
59 62parallel
Strand 7
A
67 68anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
290 293parallel
Strand 3
A
240 243parallel
Strand 4
A
177 180parallel
Strand 5
A
223 226parallel
Strand 6
A
201 204parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 253first strand
Strand 2
A
259 267anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 393first strand
Strand 2
A
396 397anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 401first strand
Strand 2
A
407 409anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il