Analysis of interatomic Contacts of Structural Units in PDB entry:
8JIZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JIZ entry

There are 8 chains in PDB entry 8JIZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 34	TRP 837
B	LYS 25	ARG 844
C	LEU 34	TRP 837
D	LYS 25	ARG 844
E	GLU 1	ASP 228
F	ASP 1	CYS 214
G	GLU 1	LYS 225
H	ASP 1	CYS 214

There are122 helices in PDB entry 8JIZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	59	Right-handed alpha
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	93	95	Right-handed 310
Helix 4	AA4	A	107	121	Right-handed alpha
Helix 5	AA5	A	150	164	Right-handed alpha
Helix 6	AA6	A	165	167	Right-handed 310
Helix 7	AA7	A	177	179	Right-handed 310
Helix 8	AA8	A	180	193	Right-handed alpha
Helix 9	AA9	A	232	246	Right-handed alpha
Helix 10	AB1	A	287	310	Right-handed alpha
Helix 11	AB2	A	334	339	Right-handed alpha
Helix 12	AB3	A	458	472	Right-handed alpha
Helix 13	AB4	A	494	502	Right-handed alpha
Helix 14	AB5	A	515	522	Right-handed alpha
Helix 15	AB6	A	560	579	Right-handed alpha
Helix 16	AB7	A	603	611	Right-handed alpha
Helix 17	AB8	A	626	632	Right-handed alpha
Helix 18	AB9	A	633	653	Right-handed alpha
Helix 19	AC1	A	667	672	Right-handed alpha
Helix 20	AC2	A	689	698	Right-handed alpha
Helix 21	AC3	A	698	708	Right-handed alpha
Helix 22	AC4	A	713	722	Right-handed alpha
Helix 23	AC5	A	732	741	Right-handed alpha
Helix 24	AC6	A	771	785	Right-handed alpha
Helix 25	AC7	A	786	795	Right-handed alpha
Helix 26	AC8	A	814	837	Right-handed alpha
Helix 27	AC9	B	35	52	Right-handed alpha
Helix 28	AD1	B	70	83	Right-handed alpha
Helix 29	AD2	B	104	112	Right-handed alpha
Helix 30	AD3	B	126	130	Right-handed 310
Helix 31	AD4	B	144	159	Right-handed alpha
Helix 32	AD5	B	170	187	Right-handed alpha
Helix 33	AD6	B	204	213	Right-handed alpha
Helix 34	AD7	B	224	237	Right-handed alpha
Helix 35	AD8	B	250	254	Right-handed 310
Helix 36	AD9	B	255	261	Right-handed alpha
Helix 37	AE1	B	276	299	Right-handed alpha
Helix 38	AE2	B	317	328	Right-handed alpha
Helix 39	AE3	B	457	471	Right-handed alpha
Helix 40	AE4	B	500	507	Right-handed alpha
Helix 41	AE5	B	520	527	Right-handed alpha
Helix 42	AE6	B	561	584	Right-handed alpha
Helix 43	AE7	B	604	615	Right-handed alpha
Helix 44	AE8	B	628	654	Right-handed alpha
Helix 45	AE9	B	669	674	Right-handed alpha
Helix 46	AF1	B	687	696	Right-handed alpha
Helix 47	AF2	B	699	704	Right-handed alpha
Helix 48	AF3	B	705	708	Right-handed 310
Helix 49	AF4	B	713	723	Right-handed alpha
Helix 50	AF5	B	732	743	Right-handed alpha
Helix 51	AF6	B	768	782	Right-handed alpha
Helix 52	AF7	B	783	793	Right-handed alpha
Helix 53	AF8	B	810	843	Right-handed alpha
Helix 54	AF9	C	45	56	Right-handed alpha
Helix 55	AG1	C	57	60	Right-handed 310
Helix 56	AG2	C	78	92	Right-handed alpha
Helix 57	AG3	C	107	121	Right-handed alpha
Helix 58	AG4	C	129	133	Right-handed 310
Helix 59	AG5	C	150	165	Right-handed alpha
Helix 60	AG6	C	179	193	Right-handed alpha
Helix 61	AG7	C	213	222	Right-handed alpha
Helix 62	AG8	C	232	246	Right-handed alpha
Helix 63	AG9	C	287	310	Right-handed alpha
Helix 64	AH1	C	379	383	Right-handed 310
Helix 65	AH2	C	458	472	Right-handed alpha
Helix 66	AH3	C	494	502	Right-handed alpha
Helix 67	AH4	C	515	522	Right-handed alpha
Helix 68	AH5	C	559	579	Right-handed alpha
Helix 69	AH6	C	603	611	Right-handed alpha
Helix 70	AH7	C	627	632	Right-handed alpha
Helix 71	AH8	C	633	652	Right-handed alpha
Helix 72	AH9	C	667	672	Right-handed alpha
Helix 73	AI1	C	673	676	Right-handed 310
Helix 74	AI2	C	688	698	Right-handed alpha
Helix 75	AI3	C	698	708	Right-handed alpha
Helix 76	AI4	C	712	723	Right-handed alpha
Helix 77	AI5	C	732	741	Right-handed alpha
Helix 78	AI6	C	742	745	Right-handed 310
Helix 79	AI7	C	771	785	Right-handed alpha
Helix 80	AI8	C	786	793	Right-handed alpha
Helix 81	AI9	C	813	836	Right-handed alpha
Helix 82	AJ1	D	34	52	Right-handed alpha
Helix 83	AJ2	D	70	83	Right-handed alpha
Helix 84	AJ3	D	104	114	Right-handed alpha
Helix 85	AJ4	D	126	130	Right-handed 310
Helix 86	AJ5	D	144	158	Right-handed alpha
Helix 87	AJ6	D	170	187	Right-handed alpha
Helix 88	AJ7	D	204	213	Right-handed alpha
Helix 89	AJ8	D	224	237	Right-handed alpha
Helix 90	AJ9	D	251	255	Right-handed 310
Helix 91	AK1	D	256	261	Right-handed alpha
Helix 92	AK2	D	276	299	Right-handed alpha
Helix 93	AK3	D	317	328	Right-handed alpha
Helix 94	AK4	D	457	471	Right-handed alpha
Helix 95	AK5	D	499	507	Right-handed alpha
Helix 96	AK6	D	520	525	Right-handed alpha
Helix 97	AK7	D	561	584	Right-handed alpha
Helix 98	AK8	D	604	615	Right-handed alpha
Helix 99	AK9	D	627	657	Right-handed alpha
Helix 100	AL1	D	669	674	Right-handed alpha
Helix 101	AL2	D	687	696	Right-handed alpha
Helix 102	AL3	D	699	706	Right-handed alpha
Helix 103	AL4	D	713	723	Right-handed alpha
Helix 104	AL5	D	733	743	Right-handed alpha
Helix 105	AL6	D	769	782	Right-handed alpha
Helix 106	AL7	D	783	793	Right-handed alpha
Helix 107	AL8	D	810	843	Right-handed alpha
Helix 108	AL9	E	28	32	Right-handed 310
Helix 109	AM1	E	61	65	Right-handed 310
Helix 110	AM2	E	87	91	Right-handed 310
Helix 111	AM3	E	167	169	Right-handed 310
Helix 112	AM4	E	198	200	Right-handed 310
Helix 113	AM5	F	79	83	Right-handed 310
Helix 114	AM6	F	121	126	Right-handed alpha
Helix 115	AM7	F	183	188	Right-handed alpha
Helix 116	AM8	G	28	32	Right-handed 310
Helix 117	AM9	G	62	65	Right-handed 310
Helix 118	AN1	G	87	91	Right-handed 310
Helix 119	AN2	G	167	169	Right-handed 310
Helix 120	AN3	H	79	83	Right-handed 310
Helix 121	AN4	H	121	126	Right-handed alpha
Helix 122	AN5	H	183	188	Right-handed alpha

There are 49 sheets in PDB entry 8JIZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	70	73	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	124	126	parallel
Strand 3	A	144	146	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	207	first strand
Strand 2	A	171	174	parallel
Strand 3	A	227	230	parallel
Strand 4	A	255	257	parallel
Strand 5	A	276	279	parallel
Strand 6	A	362	366	anti-parallel
Strand 7	A	372	377	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	410	first strand
Strand 2	A	477	479	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	420	first strand
Strand 2	A	453	457	anti-parallel
Strand 3	A	434	437	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	489	first strand
Strand 2	A	492	493	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	508	first strand
Strand 2	A	764	765	anti-parallel
Strand 3	A	523	524	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	531	first strand
Strand 2	A	759	760	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	729	731	first strand
Strand 2	A	533	538	anti-parallel
Strand 3	A	747	749	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	27	32	parallel
Strand 3	B	87	92	parallel
Strand 4	B	118	120	parallel
Strand 5	B	138	139	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	167	first strand
Strand 2	B	218	222	parallel
Strand 3	B	246	247	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	271	first strand
Strand 2	B	351	357	anti-parallel
Strand 3	B	360	367	anti-parallel
Strand 4	B	372	374	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	453	456	anti-parallel
Strand 3	B	434	436	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	682	first strand
Strand 2	B	728	731	parallel
Strand 3	B	539	543	anti-parallel
Strand 4	B	746	749	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	73	first strand
Strand 2	C	37	40	parallel
Strand 3	C	98	100	parallel
Strand 4	C	124	126	parallel
Strand 5	C	144	146	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	199	200	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	206	first strand
Strand 2	C	172	175	parallel
Strand 3	C	226	230	parallel
Strand 4	C	254	257	parallel
Strand 5	C	277	280	parallel
Strand 6	C	362	366	anti-parallel
Strand 7	C	372	374	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	377	first strand
Strand 2	C	385	386	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	456	first strand
Strand 2	C	434	438	anti-parallel
Strand 3	C	476	479	parallel
Strand 4	C	407	410	parallel
Strand 5	C	507	508	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	530	531	first strand
Strand 2	C	759	760	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	728	731	first strand
Strand 2	C	533	538	anti-parallel
Strand 3	C	747	749	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	32	first strand
Strand 2	D	87	92	parallel
Strand 3	D	118	120	parallel
Strand 4	D	138	139	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	197	first strand
Strand 2	D	163	168	parallel
Strand 3	D	218	222	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	271	first strand
Strand 2	D	351	357	anti-parallel
Strand 3	D	360	367	anti-parallel
Strand 4	D	372	374	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	333	first strand
Strand 2	D	336	338	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	477	478	first strand
Strand 2	D	400	402	parallel
Strand 3	D	512	513	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	412	413	first strand
Strand 2	D	452	455	anti-parallel
Strand 3	D	434	437	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	528	529	first strand
Strand 2	D	761	762	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	681	682	first strand
Strand 2	D	728	732	parallel
Strand 3	D	538	543	anti-parallel
Strand 4	D	746	753	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	51	first strand
Strand 2	E	34	39	anti-parallel
Strand 3	E	92	98	anti-parallel
Strand 4	E	118	120	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	135	first strand
Strand 2	E	146	156	anti-parallel
Strand 3	E	187	196	anti-parallel
Strand 4	E	174	176	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	135	first strand
Strand 2	E	146	156	anti-parallel
Strand 3	E	187	196	anti-parallel
Strand 4	E	180	181	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	165	first strand
Strand 2	E	205	211	anti-parallel
Strand 3	E	216	222	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	19	24	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	102	105	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	34	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	102	105	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	97	98	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	118	first strand
Strand 2	F	129	137	anti-parallel
Strand 3	F	174	182	anti-parallel
Strand 4	F	159	163	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	155	first strand
Strand 2	F	145	150	anti-parallel
Strand 3	F	191	197	anti-parallel
Strand 4	F	205	210	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	17	25	anti-parallel
Strand 3	G	78	84	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	118	122	parallel
Strand 3	G	92	98	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	131	135	first strand
Strand 2	G	146	156	anti-parallel
Strand 3	G	187	196	anti-parallel
Strand 4	G	174	176	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	131	135	first strand
Strand 2	G	146	156	anti-parallel
Strand 3	G	187	196	anti-parallel
Strand 4	G	180	181	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	161	165	first strand
Strand 2	G	205	211	anti-parallel
Strand 3	G	216	222	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	70	75	anti-parallel
Strand 4	H	62	65	anti-parallel

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There are 6 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	102	105	parallel
Strand 3	H	85	90	anti-parallel
Strand 4	H	33	38	anti-parallel
Strand 5	H	45	49	anti-parallel
Strand 6	H	53	54	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	102	105	parallel
Strand 3	H	85	90	anti-parallel
Strand 4	H	97	98	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	114	118	first strand
Strand 2	H	129	139	anti-parallel
Strand 3	H	173	182	anti-parallel
Strand 4	H	159	163	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	155	first strand
Strand 2	H	145	150	anti-parallel
Strand 3	H	191	197	anti-parallel
Strand 4	H	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JIZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JIZ