Analysis of interatomic Contacts of Structural Units in PDB entry:
8JJ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JJ0 entry

There are 6 chains in PDB entry 8JJ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 34	TRP 837
B	LYS 25	ARG 844
C	LEU 34	TRP 837
D	LYS 25	ARG 844
E	GLU 1	PRO 224
F	ASP 1	ARG 211

There are110 helices in PDB entry 8JJ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	59	Right-handed alpha
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	93	95	Right-handed 310
Helix 4	AA4	A	107	121	Right-handed alpha
Helix 5	AA5	A	150	164	Right-handed alpha
Helix 6	AA6	A	177	193	Right-handed alpha
Helix 7	AA7	A	214	221	Right-handed alpha
Helix 8	AA8	A	232	246	Right-handed alpha
Helix 9	AA9	A	287	310	Right-handed alpha
Helix 10	AB1	A	458	472	Right-handed alpha
Helix 11	AB2	A	494	502	Right-handed alpha
Helix 12	AB3	A	515	522	Right-handed alpha
Helix 13	AB4	A	560	579	Right-handed alpha
Helix 14	AB5	A	600	611	Right-handed alpha
Helix 15	AB6	A	627	654	Right-handed alpha
Helix 16	AB7	A	667	672	Right-handed alpha
Helix 17	AB8	A	688	696	Right-handed alpha
Helix 18	AB9	A	698	708	Right-handed alpha
Helix 19	AC1	A	713	722	Right-handed alpha
Helix 20	AC2	A	732	741	Right-handed alpha
Helix 21	AC3	A	771	784	Right-handed alpha
Helix 22	AC4	A	785	795	Right-handed alpha
Helix 23	AC5	A	814	837	Right-handed alpha
Helix 24	AC6	B	35	52	Right-handed alpha
Helix 25	AC7	B	70	84	Right-handed alpha
Helix 26	AC8	B	85	87	Right-handed 310
Helix 27	AC9	B	103	112	Right-handed alpha
Helix 28	AD1	B	125	130	Right-handed 310
Helix 29	AD2	B	144	159	Right-handed alpha
Helix 30	AD3	B	170	188	Right-handed alpha
Helix 31	AD4	B	204	213	Right-handed alpha
Helix 32	AD5	B	224	238	Right-handed alpha
Helix 33	AD6	B	255	262	Right-handed alpha
Helix 34	AD7	B	276	299	Right-handed alpha
Helix 35	AD8	B	317	328	Right-handed alpha
Helix 36	AD9	B	457	471	Right-handed alpha
Helix 37	AE1	B	499	507	Right-handed alpha
Helix 38	AE2	B	520	527	Right-handed alpha
Helix 39	AE3	B	561	583	Right-handed alpha
Helix 40	AE4	B	605	615	Right-handed alpha
Helix 41	AE5	B	628	657	Right-handed alpha
Helix 42	AE6	B	669	674	Right-handed alpha
Helix 43	AE7	B	687	696	Right-handed alpha
Helix 44	AE8	B	699	708	Right-handed alpha
Helix 45	AE9	B	713	723	Right-handed alpha
Helix 46	AF1	B	732	743	Right-handed alpha
Helix 47	AF2	B	768	782	Right-handed alpha
Helix 48	AF3	B	783	793	Right-handed alpha
Helix 49	AF4	B	810	843	Right-handed alpha
Helix 50	AF5	C	45	56	Right-handed alpha
Helix 51	AF6	C	78	92	Right-handed alpha
Helix 52	AF7	C	107	120	Right-handed alpha
Helix 53	AF8	C	129	133	Right-handed 310
Helix 54	AF9	C	150	165	Right-handed alpha
Helix 55	AG1	C	180	193	Right-handed alpha
Helix 56	AG2	C	213	221	Right-handed alpha
Helix 57	AG3	C	232	246	Right-handed alpha
Helix 58	AG4	C	287	308	Right-handed alpha
Helix 59	AG5	C	334	339	Right-handed alpha
Helix 60	AG6	C	379	383	Right-handed 310
Helix 61	AG7	C	458	472	Right-handed alpha
Helix 62	AG8	C	494	502	Right-handed alpha
Helix 63	AG9	C	515	522	Right-handed alpha
Helix 64	AH1	C	558	579	Right-handed alpha
Helix 65	AH2	C	603	611	Right-handed alpha
Helix 66	AH3	C	627	654	Right-handed alpha
Helix 67	AH4	C	667	672	Right-handed alpha
Helix 68	AH5	C	673	676	Right-handed 310
Helix 69	AH6	C	688	698	Right-handed alpha
Helix 70	AH7	C	698	707	Right-handed alpha
Helix 71	AH8	C	713	723	Right-handed alpha
Helix 72	AH9	C	732	741	Right-handed alpha
Helix 73	AI1	C	742	746	Right-handed 310
Helix 74	AI2	C	771	785	Right-handed alpha
Helix 75	AI3	C	786	793	Right-handed alpha
Helix 76	AI4	C	814	837	Right-handed alpha
Helix 77	AI5	D	36	51	Right-handed alpha
Helix 78	AI6	D	70	84	Right-handed alpha
Helix 79	AI7	D	104	114	Right-handed alpha
Helix 80	AI8	D	126	130	Right-handed 310
Helix 81	AI9	D	144	158	Right-handed alpha
Helix 82	AJ1	D	170	187	Right-handed alpha
Helix 83	AJ2	D	204	213	Right-handed alpha
Helix 84	AJ3	D	224	238	Right-handed alpha
Helix 85	AJ4	D	250	254	Right-handed 310
Helix 86	AJ5	D	256	262	Right-handed alpha
Helix 87	AJ6	D	276	299	Right-handed alpha
Helix 88	AJ7	D	317	328	Right-handed alpha
Helix 89	AJ8	D	457	471	Right-handed alpha
Helix 90	AJ9	D	490	494	Right-handed 310
Helix 91	AK1	D	499	507	Right-handed alpha
Helix 92	AK2	D	520	527	Right-handed alpha
Helix 93	AK3	D	561	583	Right-handed alpha
Helix 94	AK4	D	604	615	Right-handed alpha
Helix 95	AK5	D	628	656	Right-handed alpha
Helix 96	AK6	D	669	674	Right-handed alpha
Helix 97	AK7	D	687	696	Right-handed alpha
Helix 98	AK8	D	699	708	Right-handed alpha
Helix 99	AK9	D	713	723	Right-handed alpha
Helix 100	AL1	D	732	743	Right-handed alpha
Helix 101	AL2	D	768	782	Right-handed alpha
Helix 102	AL3	D	782	794	Right-handed alpha
Helix 103	AL4	D	810	843	Right-handed alpha
Helix 104	AL5	E	28	32	Right-handed 310
Helix 105	AL6	E	87	91	Right-handed 310
Helix 106	AL7	E	167	169	Right-handed 310
Helix 107	AL8	E	196	200	Right-handed 310
Helix 108	AL9	F	79	83	Right-handed 310
Helix 109	AM1	F	121	127	Right-handed alpha
Helix 110	AM2	F	183	189	Right-handed alpha

There are 40 sheets in PDB entry 8JJ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	70	73	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	124	126	parallel
Strand 3	A	144	146	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	227	229	parallel
Strand 3	A	255	257	parallel
Strand 4	A	276	279	parallel
Strand 5	A	363	366	anti-parallel
Strand 6	A	372	374	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	409	first strand
Strand 2	A	507	508	parallel
Strand 3	A	764	765	anti-parallel
Strand 4	A	523	524	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	420	first strand
Strand 2	A	452	457	anti-parallel
Strand 3	A	434	438	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	489	first strand
Strand 2	A	492	493	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	531	first strand
Strand 2	A	759	760	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	533	535	first strand
Strand 2	A	729	731	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	60	62	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	65	66	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	118	120	parallel
Strand 3	B	138	139	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	167	first strand
Strand 2	B	218	222	parallel
Strand 3	B	246	247	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	271	first strand
Strand 2	B	351	357	anti-parallel
Strand 3	B	360	367	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	453	456	anti-parallel
Strand 3	B	434	436	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	518	first strand
Strand 2	B	758	760	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	682	first strand
Strand 2	B	728	731	parallel
Strand 3	B	539	541	anti-parallel
Strand 4	B	748	749	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	71	73	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	126	first strand
Strand 2	C	144	146	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	173	first strand
Strand 2	C	199	204	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	254	257	parallel
Strand 3	C	277	280	parallel
Strand 4	C	362	366	anti-parallel
Strand 5	C	372	374	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	409	first strand
Strand 2	C	476	478	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	434	438	first strand
Strand 2	C	452	456	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	507	508	first strand
Strand 2	C	764	765	anti-parallel
Strand 3	C	523	524	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	727	731	first strand
Strand 2	C	533	537	anti-parallel
Strand 3	C	748	749	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	28	29	parallel
Strand 3	D	87	92	parallel
Strand 4	D	118	120	parallel
Strand 5	D	137	139	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	167	first strand
Strand 2	D	218	222	parallel
Strand 3	D	246	247	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	269	first strand
Strand 2	D	351	357	anti-parallel
Strand 3	D	360	367	anti-parallel
Strand 4	D	372	374	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	333	first strand
Strand 2	D	336	338	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	478	first strand
Strand 2	D	400	402	parallel
Strand 3	D	512	518	parallel
Strand 4	D	758	762	anti-parallel
Strand 5	D	528	529	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	412	413	first strand
Strand 2	D	450	455	anti-parallel
Strand 3	D	434	439	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	681	682	first strand
Strand 2	D	728	731	parallel
Strand 3	D	539	543	anti-parallel
Strand 4	D	746	749	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	118	121	parallel
Strand 3	E	92	98	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	134	first strand
Strand 2	E	149	156	anti-parallel
Strand 3	E	187	193	anti-parallel
Strand 4	E	174	175	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	165	first strand
Strand 2	E	206	211	anti-parallel
Strand 3	E	216	221	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	104	105	parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	44	49	anti-parallel
Strand 3	F	33	38	anti-parallel
Strand 4	F	85	90	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	118	first strand
Strand 2	F	129	137	anti-parallel
Strand 3	F	174	182	anti-parallel
Strand 4	F	159	163	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	154	first strand
Strand 2	F	145	150	anti-parallel
Strand 3	F	192	197	anti-parallel
Strand 4	F	205	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JJ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JJ0