Analysis of interatomic Contacts of Structural Units in PDB entry:
8JJ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JJ1 entry

There are 8 chains in PDB entry 8JJ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	ALA 122
A	LEU 34	TRP 837
B	LYS 25	HIS 840
C	LEU 34	TRP 837
D	LYS 25	TYR 837
E	GLN 1	ALA 122
F	ASP 1	ARG 106
G	ASP 1	ARG 106

There are115 helices in PDB entry 8JJ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	87	91	Right-handed 310
Helix 2	AA2	A	45	59	Right-handed alpha
Helix 3	AA3	A	78	91	Right-handed alpha
Helix 4	AA4	A	107	121	Right-handed alpha
Helix 5	AA5	A	129	133	Right-handed 310
Helix 6	AA6	A	150	165	Right-handed alpha
Helix 7	AA7	A	179	193	Right-handed alpha
Helix 8	AA8	A	214	221	Right-handed alpha
Helix 9	AA9	A	232	247	Right-handed alpha
Helix 10	AB1	A	287	310	Right-handed alpha
Helix 11	AB2	A	334	339	Right-handed 310
Helix 12	AB3	A	379	383	Right-handed 310
Helix 13	AB4	A	458	472	Right-handed alpha
Helix 14	AB5	A	494	502	Right-handed alpha
Helix 15	AB6	A	515	520	Right-handed alpha
Helix 16	AB7	A	559	579	Right-handed alpha
Helix 17	AB8	A	603	610	Right-handed alpha
Helix 18	AB9	A	626	651	Right-handed alpha
Helix 19	AC1	A	667	672	Right-handed alpha
Helix 20	AC2	A	689	698	Right-handed alpha
Helix 21	AC3	A	698	706	Right-handed alpha
Helix 22	AC4	A	707	709	Right-handed 310
Helix 23	AC5	A	712	722	Right-handed alpha
Helix 24	AC6	A	732	742	Right-handed alpha
Helix 25	AC7	A	743	745	Right-handed 310
Helix 26	AC8	A	771	785	Right-handed alpha
Helix 27	AC9	A	788	796	Right-handed alpha
Helix 28	AD1	A	814	837	Right-handed alpha
Helix 29	AD2	B	35	51	Right-handed alpha
Helix 30	AD3	B	70	82	Right-handed alpha
Helix 31	AD4	B	83	85	Right-handed 310
Helix 32	AD5	B	104	114	Right-handed alpha
Helix 33	AD6	B	125	130	Right-handed 310
Helix 34	AD7	B	143	145	Right-handed 310
Helix 35	AD8	B	146	159	Right-handed alpha
Helix 36	AD9	B	170	185	Right-handed alpha
Helix 37	AE1	B	186	188	Right-handed 310
Helix 38	AE2	B	204	213	Right-handed alpha
Helix 39	AE3	B	224	238	Right-handed alpha
Helix 40	AE4	B	256	261	Right-handed 310
Helix 41	AE5	B	276	299	Right-handed alpha
Helix 42	AE6	B	317	327	Right-handed alpha
Helix 43	AE7	B	457	471	Right-handed alpha
Helix 44	AE8	B	499	507	Right-handed alpha
Helix 45	AE9	B	520	525	Right-handed alpha
Helix 46	AF1	B	560	582	Right-handed alpha
Helix 47	AF2	B	605	615	Right-handed alpha
Helix 48	AF3	B	627	656	Right-handed alpha
Helix 49	AF4	B	669	674	Right-handed alpha
Helix 50	AF5	B	687	696	Right-handed alpha
Helix 51	AF6	B	699	707	Right-handed alpha
Helix 52	AF7	B	713	723	Right-handed alpha
Helix 53	AF8	B	733	743	Right-handed alpha
Helix 54	AF9	B	768	782	Right-handed alpha
Helix 55	AG1	B	783	793	Right-handed alpha
Helix 56	AG2	B	812	840	Right-handed alpha
Helix 57	AG3	C	45	55	Right-handed alpha
Helix 58	AG4	C	56	60	Right-handed 310
Helix 59	AG5	C	78	92	Right-handed alpha
Helix 60	AG6	C	107	121	Right-handed alpha
Helix 61	AG7	C	129	133	Right-handed 310
Helix 62	AG8	C	150	165	Right-handed alpha
Helix 63	AG9	C	179	194	Right-handed alpha
Helix 64	AH1	C	214	220	Right-handed alpha
Helix 65	AH2	C	232	245	Right-handed alpha
Helix 66	AH3	C	287	310	Right-handed alpha
Helix 67	AH4	C	335	339	Right-handed 310
Helix 68	AH5	C	458	472	Right-handed alpha
Helix 69	AH6	C	494	502	Right-handed alpha
Helix 70	AH7	C	515	520	Right-handed alpha
Helix 71	AH8	C	560	579	Right-handed alpha
Helix 72	AH9	C	599	613	Right-handed alpha
Helix 73	AI1	C	626	632	Right-handed alpha
Helix 74	AI2	C	633	653	Right-handed alpha
Helix 75	AI3	C	667	672	Right-handed alpha
Helix 76	AI4	C	673	676	Right-handed 310
Helix 77	AI5	C	688	696	Right-handed alpha
Helix 78	AI6	C	698	706	Right-handed alpha
Helix 79	AI7	C	707	709	Right-handed 310
Helix 80	AI8	C	712	722	Right-handed alpha
Helix 81	AI9	C	732	742	Right-handed alpha
Helix 82	AJ1	C	771	785	Right-handed alpha
Helix 83	AJ2	C	788	796	Right-handed alpha
Helix 84	AJ3	C	813	837	Right-handed alpha
Helix 85	AJ4	D	35	51	Right-handed alpha
Helix 86	AJ5	D	70	82	Right-handed alpha
Helix 87	AJ6	D	83	85	Right-handed 310
Helix 88	AJ7	D	104	114	Right-handed alpha
Helix 89	AJ8	D	146	159	Right-handed alpha
Helix 90	AJ9	D	170	185	Right-handed alpha
Helix 91	AK1	D	186	188	Right-handed 310
Helix 92	AK2	D	204	213	Right-handed alpha
Helix 93	AK3	D	224	238	Right-handed alpha
Helix 94	AK4	D	256	261	Right-handed 310
Helix 95	AK5	D	276	299	Right-handed alpha
Helix 96	AK6	D	317	328	Right-handed alpha
Helix 97	AK7	D	458	471	Right-handed alpha
Helix 98	AK8	D	499	507	Right-handed alpha
Helix 99	AK9	D	520	525	Right-handed alpha
Helix 100	AL1	D	560	583	Right-handed alpha
Helix 101	AL2	D	604	615	Right-handed alpha
Helix 102	AL3	D	627	654	Right-handed alpha
Helix 103	AL4	D	655	659	Right-handed 310
Helix 104	AL5	D	669	674	Right-handed alpha
Helix 105	AL6	D	687	696	Right-handed alpha
Helix 106	AL7	D	699	707	Right-handed alpha
Helix 107	AL8	D	713	723	Right-handed alpha
Helix 108	AL9	D	733	743	Right-handed alpha
Helix 109	AM1	D	769	782	Right-handed alpha
Helix 110	AM2	D	783	793	Right-handed alpha
Helix 111	AM3	D	810	837	Right-handed alpha
Helix 112	AM4	E	87	91	Right-handed 310
Helix 113	AM5	F	79	83	Right-handed 310
Helix 114	AM6	G	79	83	Right-handed 310
Helix 115	AM7	G	92	94	Right-handed 310

There are 33 sheets in PDB entry 8JJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	73	first strand
Strand 2	A	35	40	parallel
Strand 3	A	97	100	parallel
Strand 4	A	124	126	parallel
Strand 5	A	144	146	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	199	200	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	172	175	parallel
Strand 3	A	226	230	parallel
Strand 4	A	254	257	parallel
Strand 5	A	277	280	parallel
Strand 6	A	362	367	anti-parallel
Strand 7	A	371	377	anti-parallel
Strand 8	A	385	386	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	479	first strand
Strand 2	A	407	410	parallel
Strand 3	A	507	508	parallel
Strand 4	A	764	765	anti-parallel
Strand 5	A	523	524	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	420	first strand
Strand 2	A	451	457	anti-parallel
Strand 3	A	434	439	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	531	first strand
Strand 2	A	759	760	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	727	731	first strand
Strand 2	A	533	538	anti-parallel
Strand 3	A	747	749	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	66	first strand
Strand 2	B	27	33	parallel
Strand 3	B	87	92	parallel
Strand 4	B	118	120	parallel
Strand 5	B	137	139	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	197	first strand
Strand 2	B	164	168	parallel
Strand 3	B	218	222	parallel
Strand 4	B	246	249	parallel
Strand 5	B	267	271	parallel
Strand 6	B	351	357	anti-parallel
Strand 7	B	360	367	anti-parallel
Strand 8	B	372	374	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	478	first strand
Strand 2	B	397	402	parallel
Strand 3	B	512	513	parallel
Strand 4	B	761	762	anti-parallel
Strand 5	B	528	529	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	413	first strand
Strand 2	B	450	456	anti-parallel
Strand 3	B	434	439	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	536	first strand
Strand 2	B	756	758	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	682	first strand
Strand 2	B	728	732	parallel
Strand 3	B	538	543	anti-parallel
Strand 4	B	746	749	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	73	first strand
Strand 2	C	35	40	parallel
Strand 3	C	97	100	parallel
Strand 4	C	124	126	parallel
Strand 5	C	144	146	parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	206	first strand
Strand 2	C	172	175	parallel
Strand 3	C	226	230	parallel
Strand 4	C	254	257	parallel
Strand 5	C	277	280	parallel
Strand 6	C	362	366	anti-parallel
Strand 7	C	372	377	anti-parallel
Strand 8	C	385	386	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	446	456	first strand
Strand 2	C	434	443	anti-parallel
Strand 3	C	475	479	parallel
Strand 4	C	406	410	parallel
Strand 5	C	507	508	parallel
Strand 6	C	764	765	anti-parallel
Strand 7	C	523	524	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	530	531	first strand
Strand 2	C	759	760	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	682	683	first strand
Strand 2	C	727	731	parallel
Strand 3	C	533	538	anti-parallel
Strand 4	C	747	749	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	66	first strand
Strand 2	D	28	33	parallel
Strand 3	D	87	92	parallel
Strand 4	D	118	120	parallel
Strand 5	D	137	139	parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	197	first strand
Strand 2	D	164	168	parallel
Strand 3	D	218	222	parallel
Strand 4	D	246	249	parallel
Strand 5	D	266	271	parallel
Strand 6	D	351	357	anti-parallel
Strand 7	D	360	367	anti-parallel
Strand 8	D	372	374	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	330	first strand
Strand 2	D	338	339	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	402	first strand
Strand 2	D	473	478	parallel
Strand 3	D	434	437	parallel
Strand 4	D	452	457	anti-parallel
Strand 5	D	409	412	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	512	515	first strand
Strand 2	D	759	762	anti-parallel
Strand 3	D	528	529	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	681	682	first strand
Strand 2	D	728	732	parallel
Strand 3	D	538	543	anti-parallel
Strand 4	D	746	753	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	100	anti-parallel
Strand 4	E	32	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	100	anti-parallel
Strand 4	E	110	111	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	100	104	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	67	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	100	104	parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	33	38	anti-parallel
Strand 5	G	45	49	anti-parallel
Strand 6	G	53	54	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JJ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JJ1