Analysis of interatomic Contacts of Structural Units in PDB entry:
8JJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JJ5 entry

There are 4 chains in PDB entry 8JJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 10LEU 257
B
 ASP 26LYS 184
C
 VAL 19ASP 236
D
 THR 7TYR 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8JJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 42Right-handed alpha
Helix 2
AA2
A
47 53Right-handed alpha
Helix 3
AA3
A
58 87Right-handed alpha
Helix 4
AA4
A
88 122Right-handed alpha
Helix 5
AA5
A
124 135Right-handed alpha
Helix 6
AA6
A
139 157Right-handed alpha
Helix 7
AA7
A
162 164Right-handed 310
Helix 8
AA8
A
165 170Right-handed alpha
Helix 9
AA9
A
172 178Right-handed alpha
Helix 10
AB1
A
186 190Right-handed 310
Helix 11
AB2
A
201 206Right-handed alpha
Helix 12
AB3
A
217 257Right-handed alpha
Helix 13
AB4
B
50 54Right-handed 310
Helix 14
AB5
B
142 146Right-handed 310
Helix 15
AB6
B
153 182Right-handed alpha
Helix 16
AB7
C
69 75Right-handed 310
Helix 17
AB8
C
117 121Right-handed 310
Helix 18
AB9
C
124 132Right-handed alpha
Helix 19
AC1
C
193 197Right-handed 310
Helix 20
AC2
C
206 236Right-handed alpha
Helix 21
AC3
D
8 38Right-handed alpha
Helix 22
AC4
D
43 48Right-handed alpha
Helix 23
AC5
D
53 83Right-handed alpha
Helix 24
AC6
D
84 114Right-handed alpha
Helix 25
AC7
D
119 129Right-handed alpha
Helix 26
AC8
D
136 157Right-handed alpha
Helix 27
AC9
D
166 170Right-handed 310
Helix 28
AD1
D
173 179Right-handed alpha
Helix 29
AD2
D
187 191Right-handed 310
Helix 30
AD3
D
201 208Right-handed alpha
Helix 31
AD4
D
218 257Right-handed alpha
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There are 6 sheets in PDB entry 8JJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
104 106anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 76first strand
Strand 2
B
57 64anti-parallel
Strand 3
B
114 123anti-parallel
Strand 4
B
126 129anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 76first strand
Strand 2
B
57 64anti-parallel
Strand 3
B
114 123anti-parallel
Strand 4
B
133 136anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 43first strand
Strand 2
C
133 136anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 106first strand
Strand 2
C
60 67anti-parallel
Strand 3
C
161 169anti-parallel
Strand 4
C
176 179anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 106first strand
Strand 2
C
60 67anti-parallel
Strand 3
C
161 169anti-parallel
Strand 4
C
186 187anti-parallel
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