Analysis of interatomic Contacts of Structural Units in PDB entry:
8JJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JJ6 entry

There are 6 chains in PDB entry 8JJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 554
D
 GLY 37ALA 182
B
 MET 1ARG 554
C
 GLY 37ALA 182
E
 LEU 2LEU 32
F
 LEU 2LEU 32
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 99 helices in PDB entry 8JJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
12 21Right-handed alpha
Helix 3
AA3
A
25 37Right-handed alpha
Helix 4
AA4
A
41 54Right-handed alpha
Helix 5
AA5
A
57 82Right-handed alpha
Helix 6
AA6
A
85 101Right-handed alpha
Helix 7
AA7
A
102 104Right-handed 310
Helix 8
AA8
A
109 119Right-handed alpha
Helix 9
AA9
A
124 134Right-handed alpha
Helix 10
AB1
A
134 140Right-handed alpha
Helix 11
AB2
A
142 151Right-handed alpha
Helix 12
AB3
A
153 177Right-handed alpha
Helix 13
AB4
A
191 196Right-handed alpha
Helix 14
AB5
A
198 209Right-handed alpha
Helix 15
AB6
A
211 230Right-handed alpha
Helix 16
AB7
A
232 248Right-handed alpha
Helix 17
AB8
A
250 255Right-handed alpha
Helix 18
AB9
A
259 273Right-handed alpha
Helix 19
AC1
A
276 289Right-handed alpha
Helix 20
AC2
A
296 307Right-handed alpha
Helix 21
AC3
A
307 328Right-handed alpha
Helix 22
AC4
A
331 334Right-handed 310
Helix 23
AC5
A
335 357Right-handed alpha
Helix 24
AC6
A
366 372Right-handed alpha
Helix 25
AC7
A
372 392Right-handed alpha
Helix 26
AC8
A
408 418Right-handed alpha
Helix 27
AC9
A
418 435Right-handed alpha
Helix 28
AD1
A
437 445Right-handed alpha
Helix 29
AD2
A
451 457Right-handed 310
Helix 30
AD3
A
458 469Right-handed alpha
Helix 31
AD4
A
470 477Right-handed 310
Helix 32
AD5
A
478 486Right-handed alpha
Helix 33
AD6
A
489 494Right-handed alpha
Helix 34
AD7
A
497 512Right-handed alpha
Helix 35
AD8
A
516 527Right-handed alpha
Helix 36
AD9
A
534 551Right-handed alpha
Helix 37
AE1
A
552 554Right-handed 310
Helix 38
AE2
D
39 53Right-handed alpha
Helix 39
AE3
D
55 60Right-handed 310
Helix 40
AE4
D
61 72Right-handed alpha
Helix 41
AE5
D
76 86Right-handed alpha
Helix 42
AE6
D
89 104Right-handed alpha
Helix 43
AE7
D
107 126Right-handed alpha
Helix 44
AE8
D
128 138Right-handed alpha
Helix 45
AE9
D
143 150Right-handed alpha
Helix 46
AF1
D
152 166Right-handed alpha
Helix 47
AF2
D
169 181Right-handed alpha
Helix 48
AF3
B
3 8Right-handed alpha
Helix 49
AF4
B
12 21Right-handed alpha
Helix 50
AF5
B
25 37Right-handed alpha
Helix 51
AF6
B
43 54Right-handed alpha
Helix 52
AF7
B
57 82Right-handed alpha
Helix 53
AF8
B
85 101Right-handed alpha
Helix 54
AF9
B
102 104Right-handed 310
Helix 55
AG1
B
109 119Right-handed alpha
Helix 56
AG2
B
124 134Right-handed alpha
Helix 57
AG3
B
134 140Right-handed alpha
Helix 58
AG4
B
142 151Right-handed alpha
Helix 59
AG5
B
153 177Right-handed alpha
Helix 60
AG6
B
191 196Right-handed alpha
Helix 61
AG7
B
198 209Right-handed alpha
Helix 62
AG8
B
211 230Right-handed alpha
Helix 63
AG9
B
232 248Right-handed alpha
Helix 64
AH1
B
250 255Right-handed alpha
Helix 65
AH2
B
259 273Right-handed alpha
Helix 66
AH3
B
276 289Right-handed alpha
Helix 67
AH4
B
296 307Right-handed alpha
Helix 68
AH5
B
307 328Right-handed alpha
Helix 69
AH6
B
331 334Right-handed 310
Helix 70
AH7
B
335 350Right-handed alpha
Helix 71
AH8
B
350 357Right-handed alpha
Helix 72
AH9
B
366 372Right-handed alpha
Helix 73
AI1
B
372 392Right-handed alpha
Helix 74
AI2
B
408 418Right-handed alpha
Helix 75
AI3
B
418 435Right-handed alpha
Helix 76
AI4
B
437 445Right-handed alpha
Helix 77
AI5
B
446 449Right-handed 310
Helix 78
AI6
B
451 457Right-handed 310
Helix 79
AI7
B
458 469Right-handed alpha
Helix 80
AI8
B
470 471Right-handed 310
Helix 81
AI9
B
472 477Right-handed 310
Helix 82
AJ1
B
478 486Right-handed alpha
Helix 83
AJ2
B
489 494Right-handed alpha
Helix 84
AJ3
B
497 511Right-handed alpha
Helix 85
AJ4
B
512 515Right-handed 310
Helix 86
AJ5
B
516 527Right-handed alpha
Helix 87
AJ6
B
534 554Right-handed alpha
Helix 88
AJ7
C
39 53Right-handed alpha
Helix 89
AJ8
C
55 60Right-handed 310
Helix 90
AJ9
C
61 72Right-handed alpha
Helix 91
AK1
C
76 86Right-handed alpha
Helix 92
AK2
C
89 104Right-handed alpha
Helix 93
AK3
C
107 126Right-handed alpha
Helix 94
AK4
C
128 138Right-handed alpha
Helix 95
AK5
C
143 150Right-handed alpha
Helix 96
AK6
C
152 166Right-handed alpha
Helix 97
AK7
C
169 181Right-handed alpha
Helix 98
AK8
E
9 32Right-handed alpha
Helix 99
AK9
F
9 30Right-handed alpha
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There are no sheets in PDB entry 8JJ6
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