Analysis of interatomic Contacts of Structural Units in PDB entry:
8JJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JJ9 entry

There are 4 chains in PDB entry 8JJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 311
B
 MET 1LYS 312
C
 ARG 1SER 21
D
 ARG 1PHE 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 8JJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
19 26Right-handed alpha
Helix 3
AA3
A
29 44Right-handed alpha
Helix 4
AA4
A
52 57Right-handed alpha
Helix 5
AA5
A
59 74Right-handed alpha
Helix 6
AA6
A
79 81Right-handed 310
Helix 7
AA7
A
82 89Right-handed alpha
Helix 8
AA8
A
93 108Right-handed alpha
Helix 9
AA9
A
111 115Right-handed 310
Helix 10
AB1
A
116 128Right-handed alpha
Helix 11
AB2
A
130 145Right-handed alpha
Helix 12
AB3
A
152 157Right-handed alpha
Helix 13
AB4
A
178 183Right-handed alpha
Helix 14
AB5
A
186 200Right-handed alpha
Helix 15
AB6
A
205 207Right-handed 310
Helix 16
AB7
A
208 219Right-handed alpha
Helix 17
AB8
A
253 261Right-handed alpha
Helix 18
AB9
A
268 276Right-handed alpha
Helix 19
AC1
A
278 292Right-handed alpha
Helix 20
AC2
B
2 11Right-handed alpha
Helix 21
AC3
B
19 26Right-handed alpha
Helix 22
AC4
B
29 44Right-handed alpha
Helix 23
AC5
B
52 57Right-handed alpha
Helix 24
AC6
B
59 74Right-handed alpha
Helix 25
AC7
B
79 81Right-handed 310
Helix 26
AC8
B
82 89Right-handed alpha
Helix 27
AC9
B
93 108Right-handed alpha
Helix 28
AD1
B
111 115Right-handed 310
Helix 29
AD2
B
116 128Right-handed alpha
Helix 30
AD3
B
130 145Right-handed alpha
Helix 31
AD4
B
152 157Right-handed alpha
Helix 32
AD5
B
178 184Right-handed alpha
Helix 33
AD6
B
186 200Right-handed alpha
Helix 34
AD7
B
205 207Right-handed 310
Helix 35
AD8
B
208 219Right-handed alpha
Helix 36
AD9
B
251 261Right-handed alpha
Helix 37
AE1
B
267 275Right-handed alpha
Helix 38
AE2
B
278 292Right-handed alpha
Helix 39
AE3
B
308 312Right-handed 310
Helix 40
AE4
C
12 16Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 8JJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
171 174anti-parallel
Strand 3
A
221 224anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
296 297anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 203first strand
Strand 2
B
171 174anti-parallel
Strand 3
B
221 224anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
296 297anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il