Analysis of interatomic Contacts of Structural Units in PDB entry:
8JJM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JJM entry

There are 2 chains in PDB entry 8JJM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 5	GLU 488
B	ALA 5	GLU 488

There are 31 helices in PDB entry 8JJM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	39	Right-handed alpha
Helix 2	AA2	A	53	57	Right-handed 310
Helix 3	AA3	A	83	97	Right-handed alpha
Helix 4	AA4	A	146	150	Right-handed 310
Helix 5	AA5	A	159	161	Right-handed 310
Helix 6	AA6	A	210	229	Right-handed alpha
Helix 7	AA7	A	237	241	Right-handed 310
Helix 8	AA8	A	242	258	Right-handed alpha
Helix 9	AA9	A	271	282	Right-handed alpha
Helix 10	AB1	A	290	302	Right-handed alpha
Helix 11	AB2	A	308	312	Right-handed 310
Helix 12	AB3	A	316	321	Right-handed alpha
Helix 13	AB4	A	345	347	Right-handed 310
Helix 14	AB5	A	348	359	Right-handed alpha
Helix 15	AB6	A	368	373	Right-handed alpha
Helix 16	AB7	A	390	401	Right-handed alpha
Helix 17	AB8	B	23	39	Right-handed alpha
Helix 18	AB9	B	53	57	Right-handed 310
Helix 19	AC1	B	83	97	Right-handed alpha
Helix 20	AC2	B	159	161	Right-handed 310
Helix 21	AC3	B	210	229	Right-handed alpha
Helix 22	AC4	B	237	241	Right-handed 310
Helix 23	AC5	B	242	258	Right-handed alpha
Helix 24	AC6	B	271	282	Right-handed alpha
Helix 25	AC7	B	290	303	Right-handed alpha
Helix 26	AC8	B	308	312	Right-handed 310
Helix 27	AC9	B	316	321	Right-handed alpha
Helix 28	AD1	B	345	347	Right-handed 310
Helix 29	AD2	B	348	359	Right-handed alpha
Helix 30	AD3	B	368	373	Right-handed alpha
Helix 31	AD4	B	390	402	Right-handed alpha

There are 12 sheets in PDB entry 8JJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	42	45	parallel
Strand 3	A	100	105	parallel
Strand 4	A	232	235	parallel
Strand 5	A	262	265	parallel
Strand 6	A	287	289	parallel
Strand 7	A	325	327	parallel
Strand 8	A	363	367	parallel
Strand 9	A	10	12	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	62	64	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	204	206	anti-parallel
Strand 3	A	163	169	anti-parallel
Strand 4	A	174	180	anti-parallel
Strand 5	A	115	124	anti-parallel
Strand 6	A	132	143	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	378	first strand
Strand 2	A	381	385	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	409	first strand
Strand 2	A	415	420	anti-parallel
Strand 3	A	429	435	anti-parallel
Strand 4	A	480	486	anti-parallel
Strand 5	A	452	455	anti-parallel
Strand 6	A	464	465	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	445	first strand
Strand 2	A	471	476	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	42	45	parallel
Strand 3	B	100	105	parallel
Strand 4	B	232	235	parallel
Strand 5	B	262	265	parallel
Strand 6	B	287	289	parallel
Strand 7	B	325	327	parallel
Strand 8	B	363	367	parallel
Strand 9	B	10	12	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	62	64	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	204	206	anti-parallel
Strand 3	B	163	169	anti-parallel
Strand 4	B	174	180	anti-parallel
Strand 5	B	115	124	anti-parallel
Strand 6	B	132	143	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	378	first strand
Strand 2	B	381	385	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	409	first strand
Strand 2	B	415	420	anti-parallel
Strand 3	B	430	435	anti-parallel
Strand 4	B	480	486	anti-parallel
Strand 5	B	452	455	anti-parallel
Strand 6	B	464	465	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	445	first strand
Strand 2	B	471	476	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JJM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JJM