Analysis of interatomic Contacts of Structural Units in PDB entry:
8JJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JJN entry

There are 3 chains in PDB entry 8JJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ASN 3PRO 328
A
 ASN 3GLN 327
B
 ASN 3PRO 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8JJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
18 32Right-handed alpha
Helix 2
AA2
C
47 51Right-handed 310
Helix 3
AA3
C
62 73Right-handed alpha
Helix 4
AA4
C
84 89Right-handed alpha
Helix 5
AA5
C
90 93Right-handed 310
Helix 6
AA6
C
94 104Right-handed alpha
Helix 7
AA7
C
113 118Right-handed 310
Helix 8
AA8
C
119 123Right-handed 310
Helix 9
AA9
C
155 158Right-handed 310
Helix 10
AB1
C
159 170Right-handed alpha
Helix 11
AB2
C
188 200Right-handed alpha
Helix 12
AB3
C
210 221Right-handed alpha
Helix 13
AB4
C
234 242Right-handed alpha
Helix 14
AB5
C
252 260Right-handed alpha
Helix 15
AB6
C
271 286Right-handed alpha
Helix 16
AB7
C
294 307Right-handed alpha
Helix 17
AB8
C
308 310Right-handed 310
Helix 18
AB9
C
311 327Right-handed alpha
Helix 19
AC1
A
18 32Right-handed alpha
Helix 20
AC2
A
47 51Right-handed 310
Helix 21
AC3
A
62 73Right-handed alpha
Helix 22
AC4
A
94 104Right-handed alpha
Helix 23
AC5
A
113 118Right-handed alpha
Helix 24
AC6
A
119 124Right-handed 310
Helix 25
AC7
A
155 158Right-handed 310
Helix 26
AC8
A
159 170Right-handed alpha
Helix 27
AC9
A
188 200Right-handed alpha
Helix 28
AD1
A
210 221Right-handed alpha
Helix 29
AD2
A
234 242Right-handed alpha
Helix 30
AD3
A
252 260Right-handed alpha
Helix 31
AD4
A
271 285Right-handed alpha
Helix 32
AD5
A
294 307Right-handed alpha
Helix 33
AD6
A
308 310Right-handed 310
Helix 34
AD7
A
311 327Right-handed alpha
Helix 35
AD8
B
20 32Right-handed alpha
Helix 36
AD9
B
47 51Right-handed 310
Helix 37
AE1
B
62 73Right-handed alpha
Helix 38
AE2
B
89 94Right-handed alpha
Helix 39
AE3
B
94 104Right-handed alpha
Helix 40
AE4
B
113 118Right-handed 310
Helix 41
AE5
B
119 124Right-handed 310
Helix 42
AE6
B
155 158Right-handed 310
Helix 43
AE7
B
159 170Right-handed alpha
Helix 44
AE8
B
188 200Right-handed alpha
Helix 45
AE9
B
210 221Right-handed alpha
Helix 46
AF1
B
234 242Right-handed alpha
Helix 47
AF2
B
252 260Right-handed alpha
Helix 48
AF3
B
271 286Right-handed alpha
Helix 49
AF4
B
294 307Right-handed alpha
Helix 50
AF5
B
308 310Right-handed 310
Helix 51
AF6
B
311 327Right-handed alpha
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There are 6 sheets in PDB entry 8JJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 40first strand
Strand 2
C
5 9parallel
Strand 3
C
53 57parallel
Strand 4
C
78 82parallel
Strand 5
C
106 109parallel
Strand 6
C
126 128parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
203 207first strand
Strand 2
C
176 181parallel
Strand 3
C
146 151parallel
Strand 4
C
223 226parallel
Strand 5
C
247 250parallel
Strand 6
C
266 267parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
5 9parallel
Strand 3
A
53 57parallel
Strand 4
A
78 81parallel
Strand 5
A
106 109parallel
Strand 6
A
126 128parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 207first strand
Strand 2
A
176 181parallel
Strand 3
A
146 151parallel
Strand 4
A
223 226parallel
Strand 5
A
247 250parallel
Strand 6
A
266 267parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 40first strand
Strand 2
B
5 9parallel
Strand 3
B
53 57parallel
Strand 4
B
78 81parallel
Strand 5
B
106 109parallel
Strand 6
B
126 128parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 207first strand
Strand 2
B
176 181parallel
Strand 3
B
146 151parallel
Strand 4
B
223 226parallel
Strand 5
B
247 250parallel
Strand 6
B
266 267parallel
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