Analysis of interatomic Contacts of Structural Units in PDB entry:
8JJR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JJR entry

There are 26 chains in PDB entry 8JJR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 58	ASN 251
B	ALA 75	CYS 259
C	ALA 1	PHE 192
D	GLY 1	ASN 177
E	LEU 59	LEU 242
F	GLU 62	VAL 286
G	GLU 28	SER 200
H	PRO 80	LEU 271
I	LEU 26	MET 246
J	PHE 31	TYR 203
K	GLU 73	GLN 226
T	GLU 60	GLY 199
U	SER 1	PHE 121
a	ALA 1	THR 687
b	ASN 4	SER 669
c	SER 76	SER 161
d	GLU 77	LEU 295
e	PRO 49	VAL 121
f	ASN 111	SER 279
i	LYS 60	ALA 179
j	ASP 43	TRP 141
l	ILE 108	GLY 360
m	ARG 64	PHE 142
r	TYR 22	LYS 152
x	SER 40	GLU 118
y	PRO 94	TYR 223

There are199 helices in PDB entry 8JJR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	86	91	Right-handed alpha
Helix 2	AA2	A	92	120	Right-handed alpha
Helix 3	AA3	A	130	132	Right-handed 310
Helix 4	AA4	A	133	138	Right-handed alpha
Helix 5	AA5	A	139	159	Right-handed alpha
Helix 6	AA6	A	183	187	Right-handed 310
Helix 7	AA7	A	190	223	Right-handed alpha
Helix 8	AA8	A	245	251	Right-handed alpha
Helix 9	AA9	B	94	125	Right-handed alpha
Helix 10	AB1	B	137	143	Right-handed alpha
Helix 11	AB2	B	144	162	Right-handed alpha
Helix 12	AB3	B	177	182	Right-handed alpha
Helix 13	AB4	B	185	218	Right-handed alpha
Helix 14	AB5	B	220	229	Right-handed alpha
Helix 15	AB6	C	56	84	Right-handed alpha
Helix 16	AB7	C	89	95	Right-handed alpha
Helix 17	AB8	C	100	109	Right-handed alpha
Helix 18	AB9	C	110	134	Right-handed alpha
Helix 19	AC1	C	147	151	Right-handed 310
Helix 20	AC2	C	154	187	Right-handed alpha
Helix 21	AC3	D	15	19	Right-handed 310
Helix 22	AC4	D	38	66	Right-handed alpha
Helix 23	AC5	D	77	89	Right-handed alpha
Helix 24	AC6	D	89	115	Right-handed alpha
Helix 25	AC7	D	133	166	Right-handed alpha
Helix 26	AC8	E	62	67	Right-handed alpha
Helix 27	AC9	E	68	70	Right-handed 310
Helix 28	AD1	E	79	84	Right-handed 310
Helix 29	AD2	E	100	104	Right-handed 310
Helix 30	AD3	E	107	135	Right-handed alpha
Helix 31	AD4	E	149	151	Right-handed 310
Helix 32	AD5	E	152	158	Right-handed alpha
Helix 33	AD6	E	159	161	Right-handed 310
Helix 34	AD7	E	162	184	Right-handed alpha
Helix 35	AD8	E	203	236	Right-handed alpha
Helix 36	AD9	E	238	242	Right-handed 310
Helix 37	AE1	F	104	112	Right-handed alpha
Helix 38	AE2	F	134	143	Right-handed alpha
Helix 39	AE3	F	150	178	Right-handed alpha
Helix 40	AE4	F	190	198	Right-handed alpha
Helix 41	AE5	F	202	221	Right-handed alpha
Helix 42	AE6	F	248	279	Right-handed alpha
Helix 43	AE7	G	50	55	Right-handed alpha
Helix 44	AE8	G	58	86	Right-handed alpha
Helix 45	AE9	G	102	109	Right-handed alpha
Helix 46	AF1	G	115	136	Right-handed alpha
Helix 47	AF2	G	159	191	Right-handed alpha
Helix 48	AF3	H	80	85	Right-handed 310
Helix 49	AF4	H	103	108	Right-handed alpha
Helix 50	AF5	H	111	139	Right-handed alpha
Helix 51	AF6	H	144	149	Right-handed alpha
Helix 52	AF7	H	152	161	Right-handed alpha
Helix 53	AF8	H	184	207	Right-handed alpha
Helix 54	AF9	H	232	265	Right-handed alpha
Helix 55	AG1	H	267	271	Right-handed 310
Helix 56	AG2	I	29	33	Right-handed 310
Helix 57	AG3	I	55	85	Right-handed alpha
Helix 58	AG4	I	88	96	Right-handed alpha
Helix 59	AG5	I	102	110	Right-handed alpha
Helix 60	AG6	I	111	131	Right-handed alpha
Helix 61	AG7	I	160	190	Right-handed alpha
Helix 62	AG8	I	206	211	Right-handed alpha
Helix 63	AG9	J	54	85	Right-handed alpha
Helix 64	AH1	J	93	96	Right-handed 310
Helix 65	AH2	J	107	112	Right-handed alpha
Helix 66	AH3	J	113	130	Right-handed alpha
Helix 67	AH4	J	146	153	Right-handed 310
Helix 68	AH5	J	164	196	Right-handed alpha
Helix 69	AH6	K	97	128	Right-handed alpha
Helix 70	AH7	K	139	144	Right-handed 310
Helix 71	AH8	K	145	165	Right-handed alpha
Helix 72	AH9	K	192	220	Right-handed alpha
Helix 73	AI1	T	78	107	Right-handed alpha
Helix 74	AI2	T	120	125	Right-handed 310
Helix 75	AI3	T	126	145	Right-handed alpha
Helix 76	AI4	T	170	199	Right-handed alpha
Helix 77	AI5	U	2	31	Right-handed alpha
Helix 78	AI6	U	38	42	Right-handed 310
Helix 79	AI7	U	52	58	Right-handed alpha
Helix 80	AI8	U	59	76	Right-handed alpha
Helix 81	AI9	U	95	121	Right-handed alpha
Helix 82	AJ1	a	2	6	Right-handed 310
Helix 83	AJ2	a	7	13	Right-handed 310
Helix 84	AJ3	a	18	22	Right-handed 310
Helix 85	AJ4	a	27	38	Right-handed alpha
Helix 86	AJ5	a	40	44	Right-handed 310
Helix 87	AJ6	a	47	80	Right-handed alpha
Helix 88	AJ7	a	82	89	Right-handed alpha
Helix 89	AJ8	a	105	110	Right-handed 310
Helix 90	AJ9	a	125	134	Right-handed alpha
Helix 91	AK1	a	137	166	Right-handed alpha
Helix 92	AK2	a	171	174	Right-handed 310
Helix 93	AK3	a	175	186	Right-handed alpha
Helix 94	AK4	a	188	202	Right-handed alpha
Helix 95	AK5	a	202	213	Right-handed alpha
Helix 96	AK6	a	216	221	Right-handed alpha
Helix 97	AK7	a	252	276	Right-handed alpha
Helix 98	AK8	a	282	292	Right-handed alpha
Helix 99	AK9	a	294	320	Right-handed alpha
Helix 100	AL1	a	329	362	Right-handed alpha
Helix 101	AL2	a	365	369	Right-handed 310
Helix 102	AL3	a	370	403	Right-handed alpha
Helix 103	AL4	a	404	408	Right-handed 310
Helix 104	AL5	a	446	473	Right-handed alpha
Helix 105	AL6	a	482	487	Right-handed alpha
Helix 106	AL7	a	504	535	Right-handed alpha
Helix 107	AL8	a	568	573	Right-handed alpha
Helix 108	AL9	a	575	583	Right-handed alpha
Helix 109	AM1	a	583	588	Right-handed alpha
Helix 110	AM2	a	588	593	Right-handed alpha
Helix 111	AM3	a	600	623	Right-handed alpha
Helix 112	AM4	a	624	642	Right-handed alpha
Helix 113	AM5	a	654	687	Right-handed alpha
Helix 114	AM6	b	9	17	Right-handed alpha
Helix 115	AM7	b	21	25	Right-handed 310
Helix 116	AM8	b	30	64	Right-handed alpha
Helix 117	AM9	b	65	72	Right-handed alpha
Helix 118	AN1	b	110	119	Right-handed alpha
Helix 119	AN2	b	122	160	Right-handed alpha
Helix 120	AN3	b	165	174	Right-handed 310
Helix 121	AN4	b	176	181	Right-handed alpha
Helix 122	AN5	b	182	192	Right-handed alpha
Helix 123	AN6	b	194	208	Right-handed alpha
Helix 124	AN7	b	208	214	Right-handed alpha
Helix 125	AN8	b	221	225	Right-handed 310
Helix 126	AN9	b	239	258	Right-handed alpha
Helix 127	AO1	b	271	279	Right-handed alpha
Helix 128	AO2	b	288	314	Right-handed alpha
Helix 129	AO3	b	323	356	Right-handed alpha
Helix 130	AO4	b	367	375	Right-handed alpha
Helix 131	AO5	b	375	408	Right-handed alpha
Helix 132	AO6	b	409	413	Right-handed 310
Helix 133	AO7	b	418	438	Right-handed alpha
Helix 134	AO8	b	455	483	Right-handed alpha
Helix 135	AO9	b	513	542	Right-handed alpha
Helix 136	AP1	b	542	550	Right-handed alpha
Helix 137	AP2	b	552	560	Right-handed alpha
Helix 138	AP3	b	560	565	Right-handed alpha
Helix 139	AP4	b	565	571	Right-handed alpha
Helix 140	AP5	b	580	603	Right-handed alpha
Helix 141	AP6	b	604	622	Right-handed alpha
Helix 142	AP7	b	622	627	Right-handed alpha
Helix 143	AP8	b	640	659	Right-handed alpha
Helix 144	AP9	b	659	669	Right-handed alpha
Helix 145	AQ1	c	89	95	Right-handed alpha
Helix 146	AQ2	c	118	122	Right-handed 310
Helix 147	AQ3	c	126	132	Right-handed alpha
Helix 148	AQ4	c	149	154	Right-handed alpha
Helix 149	AQ5	d	147	161	Right-handed alpha
Helix 150	AQ6	d	204	208	Right-handed 310
Helix 151	AQ7	d	227	241	Right-handed alpha
Helix 152	AQ8	d	268	294	Right-handed alpha
Helix 153	AQ9	f	112	117	Right-handed 310
Helix 154	AR1	f	130	150	Right-handed alpha
Helix 155	AR2	f	155	176	Right-handed alpha
Helix 156	AR3	f	201	227	Right-handed alpha
Helix 157	AR4	f	228	234	Right-handed alpha
Helix 158	AR5	f	236	247	Right-handed alpha
Helix 159	AR6	f	249	261	Right-handed alpha
Helix 160	AR7	f	266	270	Right-handed 310
Helix 161	AR8	i	64	77	Right-handed alpha
Helix 162	AR9	i	77	92	Right-handed alpha
Helix 163	AS1	i	104	117	Right-handed alpha
Helix 164	AS2	i	132	148	Right-handed alpha
Helix 165	AS3	i	155	165	Right-handed alpha
Helix 166	AS4	i	174	179	Right-handed alpha
Helix 167	AS5	j	53	57	Right-handed 310
Helix 168	AS6	j	102	112	Right-handed alpha
Helix 169	AS7	j	112	135	Right-handed alpha
Helix 170	AS8	j	136	139	Right-handed 310
Helix 171	AS9	l	123	134	Right-handed alpha
Helix 172	AT1	l	135	139	Right-handed 310
Helix 173	AT2	l	146	156	Right-handed alpha
Helix 174	AT3	l	167	178	Right-handed alpha
Helix 175	AT4	l	180	184	Right-handed 310
Helix 176	AT5	l	186	203	Right-handed alpha
Helix 177	AT6	l	237	242	Right-handed alpha
Helix 178	AT7	l	242	252	Right-handed alpha
Helix 179	AT8	l	260	284	Right-handed alpha
Helix 180	AT9	l	291	318	Right-handed alpha
Helix 181	AU1	l	331	359	Right-handed alpha
Helix 182	AU2	m	68	75	Right-handed alpha
Helix 183	AU3	m	87	115	Right-handed alpha
Helix 184	AU4	m	119	124	Right-handed alpha
Helix 185	AU5	m	131	141	Right-handed alpha
Helix 186	AU6	r	25	46	Right-handed alpha
Helix 187	AU7	r	51	55	Right-handed 310
Helix 188	AU8	r	75	84	Right-handed 310
Helix 189	AU9	r	85	109	Right-handed alpha
Helix 190	AV1	r	113	120	Right-handed alpha
Helix 191	AV2	r	124	132	Right-handed alpha
Helix 192	AV3	r	132	150	Right-handed alpha
Helix 193	AV4	x	98	103	Right-handed alpha
Helix 194	AV5	x	114	118	Right-handed 310
Helix 195	AV6	y	95	103	Right-handed alpha
Helix 196	AV7	y	112	128	Right-handed alpha
Helix 197	AV8	y	135	140	Right-handed 310
Helix 198	AV9	y	147	152	Right-handed 310
Helix 199	AW1	y	176	197	Right-handed alpha

There are 18 sheets in PDB entry 8JJR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	73	first strand
Strand 2	l	165	166	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	90	92	first strand
Strand 2	J	97	98	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	111	112	first strand
Strand 2	a	118	119	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	432	433	first strand
Strand 2	a	438	440	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	538	540	first strand
Strand 2	a	558	562	anti-parallel
Strand 3	y	170	171	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	79	83	first strand
Strand 2	b	103	106	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	161	162	first strand
Strand 2	d	259	260	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	231	232	first strand
Strand 2	b	237	238	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	139	142	first strand
Strand 2	c	78	82	anti-parallel
Strand 3	d	200	201	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	101	104	first strand
Strand 2	c	112	115	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	97	98	first strand
Strand 2	d	133	135	anti-parallel
Strand 3	d	125	127	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	139	145	first strand
Strand 2	d	113	120	anti-parallel
Strand 3	d	167	171	anti-parallel
Strand 4	d	177	179	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	102	105	first strand
Strand 2	e	88	91	anti-parallel
Strand 3	e	72	77	anti-parallel
Strand 4	e	58	61	anti-parallel
Strand 5	e	110	112	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	124	126	first strand
Strand 2	f	179	181	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	51	52	first strand
Strand 2	j	71	75	parallel
Strand 3	j	83	87	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	204	211	first strand
Strand 2	l	214	223	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	68	69	first strand
Strand 2	r	72	73	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	71	77	first strand
Strand 2	x	83	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JJR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JJR