Analysis of interatomic Contacts of Structural Units in PDB entry:
8JKB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JKB entry

There are 15 chains in PDB entry 8JKB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 3	ASN 340
G	ALA 7	ARG 62
F	GLU 3	ASN 340
L	ALA 7	ARG 62
A	PRO 153	ASN 211
H	PRO 153	ASN 211
C	PRO 153	ASN 211
D	PRO 153	ASN 211
E	PRO 153	ASN 211
I	GLU 3	ASN 340
M	ALA 7	ARG 62
J	GLU 3	ASN 340
N	ALA 7	ARG 62
K	GLU 3	ASN 340
O	ALA 7	ARG 62

There are 30 helices in PDB entry 8JKB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	3	24	Right-handed alpha
Helix 2	AA2	B	29	35	Right-handed alpha
Helix 3	AA3	G	8	24	Right-handed alpha
Helix 4	AA4	G	29	44	Right-handed alpha
Helix 5	AA5	G	45	48	Right-handed 310
Helix 6	AA6	F	4	26	Right-handed alpha
Helix 7	AA7	F	29	35	Right-handed alpha
Helix 8	AA8	L	8	24	Right-handed alpha
Helix 9	AA9	L	30	44	Right-handed alpha
Helix 10	AB1	L	45	48	Right-handed 310
Helix 11	AB2	A	168	174	Right-handed alpha
Helix 12	AB3	H	167	174	Right-handed alpha
Helix 13	AB4	C	164	166	Right-handed 310
Helix 14	AB5	C	167	174	Right-handed alpha
Helix 15	AB6	D	167	174	Right-handed alpha
Helix 16	AB7	E	168	173	Right-handed alpha
Helix 17	AB8	I	4	25	Right-handed alpha
Helix 18	AB9	I	29	35	Right-handed alpha
Helix 19	AC1	M	8	24	Right-handed alpha
Helix 20	AC2	M	30	44	Right-handed alpha
Helix 21	AC3	M	45	48	Right-handed 310
Helix 22	AC4	J	4	24	Right-handed alpha
Helix 23	AC5	J	29	35	Right-handed alpha
Helix 24	AC6	N	8	24	Right-handed alpha
Helix 25	AC7	N	29	44	Right-handed alpha
Helix 26	AC8	N	45	48	Right-handed 310
Helix 27	AC9	K	4	25	Right-handed alpha
Helix 28	AD1	K	29	35	Right-handed alpha
Helix 29	AD2	O	8	24	Right-handed alpha
Helix 30	AD3	O	29	44	Right-handed alpha

There are 41 sheets in PDB entry 8JKB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	77	83	anti-parallel
Strand 4	B	88	93	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	153	first strand
Strand 2	B	156	160	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	192	first strand
Strand 2	B	198	201	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	220	223	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	306	308	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	51	first strand
Strand 2	F	336	339	anti-parallel
Strand 3	F	327	331	anti-parallel
Strand 4	F	315	320	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	63	first strand
Strand 2	F	69	73	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	88	94	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	105	first strand
Strand 2	F	111	114	anti-parallel
Strand 3	F	121	125	anti-parallel
Strand 4	F	134	139	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	153	first strand
Strand 2	F	156	160	anti-parallel
Strand 3	F	166	170	anti-parallel
Strand 4	F	176	180	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	190	192	first strand
Strand 2	F	198	201	anti-parallel
Strand 3	F	208	212	anti-parallel
Strand 4	F	221	222	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	229	232	first strand
Strand 2	F	240	245	anti-parallel
Strand 3	F	250	254	anti-parallel
Strand 4	F	260	264	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	273	278	first strand
Strand 2	F	284	289	anti-parallel
Strand 3	F	294	298	anti-parallel
Strand 4	F	306	308	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	160	first strand
Strand 2	A	204	207	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	200	201	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	157	164	first strand
Strand 2	H	200	207	anti-parallel
Strand 3	H	186	187	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	161	first strand
Strand 2	C	203	207	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	163	first strand
Strand 2	D	201	208	anti-parallel
Strand 3	D	184	186	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	164	first strand
Strand 2	E	200	207	anti-parallel
Strand 3	E	183	187	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	46	51	first strand
Strand 2	I	336	340	anti-parallel
Strand 3	I	327	331	anti-parallel
Strand 4	I	315	320	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	60	63	first strand
Strand 2	I	69	73	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	88	94	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	104	105	first strand
Strand 2	I	112	113	anti-parallel
Strand 3	I	121	125	anti-parallel
Strand 4	I	134	139	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	148	153	first strand
Strand 2	I	156	160	anti-parallel
Strand 3	I	166	170	anti-parallel
Strand 4	I	176	180	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	190	192	first strand
Strand 2	I	198	201	anti-parallel
Strand 3	I	207	212	anti-parallel
Strand 4	I	220	223	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	232	234	first strand
Strand 2	I	240	244	anti-parallel
Strand 3	I	250	254	anti-parallel
Strand 4	I	260	264	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	273	278	first strand
Strand 2	I	284	289	anti-parallel
Strand 3	I	294	298	anti-parallel
Strand 4	I	306	308	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	47	51	first strand
Strand 2	J	336	339	anti-parallel
Strand 3	J	327	331	anti-parallel
Strand 4	J	315	320	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	60	63	first strand
Strand 2	J	70	73	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	88	94	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	100	105	first strand
Strand 2	J	112	116	anti-parallel
Strand 3	J	121	125	anti-parallel
Strand 4	J	134	139	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	148	153	first strand
Strand 2	J	156	160	anti-parallel
Strand 3	J	166	170	anti-parallel
Strand 4	J	176	180	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	190	192	first strand
Strand 2	J	198	201	anti-parallel
Strand 3	J	208	212	anti-parallel
Strand 4	J	220	222	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	229	234	first strand
Strand 2	J	241	245	anti-parallel
Strand 3	J	249	252	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	273	278	first strand
Strand 2	J	284	289	anti-parallel
Strand 3	J	294	298	anti-parallel
Strand 4	J	306	308	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	47	51	first strand
Strand 2	K	336	339	anti-parallel
Strand 3	K	327	331	anti-parallel
Strand 4	K	315	320	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	60	63	first strand
Strand 2	K	69	73	anti-parallel
Strand 3	K	79	83	anti-parallel
Strand 4	K	88	93	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	100	105	first strand
Strand 2	K	112	116	anti-parallel
Strand 3	K	122	125	anti-parallel
Strand 4	K	134	138	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	148	153	first strand
Strand 2	K	156	160	anti-parallel
Strand 3	K	166	170	anti-parallel
Strand 4	K	175	180	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	190	192	first strand
Strand 2	K	198	201	anti-parallel
Strand 3	K	208	212	anti-parallel
Strand 4	K	221	222	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	229	234	first strand
Strand 2	K	241	245	anti-parallel
Strand 3	K	250	253	anti-parallel
Strand 4	K	260	264	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	273	278	first strand
Strand 2	K	284	289	anti-parallel
Strand 3	K	294	298	anti-parallel
Strand 4	K	306	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JKB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JKB