Analysis of interatomic Contacts of Structural Units in PDB entry:
8JKF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JKF entry

There are 8 chains in PDB entry 8JKF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	VAL 2	SER 115
L	ILE 2	LYS 107
h	VAL 2	SER 115
l	ILE 2	LYS 107
a	HIS 0	ALA 352
A	HIS -2	ALA 352
M	VAL 2	SER 115
N	ILE 2	LEU 11

There are 44 helices in PDB entry 8JKF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	28	32	Right-handed 310
Helix 2	AA2	H	86	90	Right-handed 310
Helix 3	AA3	L	49	53	Right-handed 310
Helix 4	AA4	L	79	83	Right-handed 310
Helix 5	AA5	h	28	32	Right-handed 310
Helix 6	AA6	h	86	90	Right-handed 310
Helix 7	AA7	l	79	83	Right-handed 310
Helix 8	AA8	a	38	52	Right-handed alpha
Helix 9	AA9	a	61	81	Right-handed alpha
Helix 10	AB1	a	144	146	Right-handed 310
Helix 11	AB2	a	180	183	Right-handed 310
Helix 12	AB3	a	226	230	Right-handed 310
Helix 13	AB4	a	244	248	Right-handed 310
Helix 14	AB5	a	252	256	Right-handed 310
Helix 15	AB6	A	28	32	Right-handed 310
Helix 16	AB7	A	38	52	Right-handed alpha
Helix 17	AB8	A	61	82	Right-handed alpha
Helix 18	AB9	A	144	146	Right-handed 310
Helix 19	AC1	A	180	183	Right-handed 310
Helix 20	AC2	A	237	241	Right-handed 310
Helix 21	AC3	A	244	248	Right-handed 310
Helix 22	AC4	A	252	256	Right-handed 310
Helix 23	AC5	A	341	345	Right-handed 310
Helix 24	AC6	M	28	32	Right-handed 310
Helix 25	AC7	M	61	64	Right-handed 310
Helix 26	AC8	M	86	90	Right-handed 310
Helix 27	AC9	B	38	53	Right-handed alpha
Helix 28	AD1	B	61	82	Right-handed alpha
Helix 29	AD2	B	144	146	Right-handed 310
Helix 30	AD3	B	180	183	Right-handed 310
Helix 31	AD4	B	226	230	Right-handed 310
Helix 32	AD5	B	237	241	Right-handed 310
Helix 33	AD6	B	244	248	Right-handed 310
Helix 34	AD7	B	252	256	Right-handed 310
Helix 35	AD8	B	341	345	Right-handed 310
Helix 36	AD9	b	38	52	Right-handed alpha
Helix 37	AE1	b	61	82	Right-handed alpha
Helix 38	AE2	b	144	146	Right-handed 310
Helix 39	AE3	b	180	183	Right-handed 310
Helix 40	AE4	b	226	230	Right-handed 310
Helix 41	AE5	b	244	248	Right-handed 310
Helix 42	AE6	b	252	256	Right-handed 310
Helix 43	AE7	m	28	32	Right-handed 310
Helix 44	AE8	m	86	90	Right-handed 310

There are 42 sheets in PDB entry 8JKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	109	113	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	109	113	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	102	105	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	66	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	106	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	48	first strand
Strand 2	L	33	38	anti-parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	3	7	first strand
Strand 2	h	18	25	anti-parallel
Strand 3	h	77	82	anti-parallel
Strand 4	h	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	10	12	first strand
Strand 2	h	109	113	parallel
Strand 3	h	91	98	anti-parallel
Strand 4	h	33	39	anti-parallel
Strand 5	h	45	51	anti-parallel
Strand 6	h	57	59	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	10	12	first strand
Strand 2	h	109	113	parallel
Strand 3	h	91	98	anti-parallel
Strand 4	h	102	104	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	4	7	first strand
Strand 2	l	19	25	anti-parallel
Strand 3	l	70	75	anti-parallel
Strand 4	l	62	64	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	10	13	first strand
Strand 2	l	102	106	parallel
Strand 3	l	85	90	anti-parallel
Strand 4	l	33	38	anti-parallel
Strand 5	l	45	49	anti-parallel
Strand 6	l	53	54	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	10	13	first strand
Strand 2	l	102	106	parallel
Strand 3	l	85	90	anti-parallel
Strand 4	l	97	98	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	1	7	first strand
Strand 2	a	12	22	anti-parallel
Strand 3	A	13	22	anti-parallel
Strand 4	A	1	6	anti-parallel
Strand 5	a	1	7	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	33	36	first strand
Strand 2	a	166	171	parallel
Strand 3	a	153	155	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	56	57	first strand
Strand 2	a	148	149	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	87	89	first strand
Strand 2	a	132	134	parallel

Back to list of sheets
Back to top of page

There are 14 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	329	331	first strand
Strand 2	a	321	324	anti-parallel
Strand 3	a	273	277	anti-parallel
Strand 4	a	210	217	anti-parallel
Strand 5	a	200	206	anti-parallel
Strand 6	a	192	196	anti-parallel
Strand 7	a	185	189	anti-parallel
Strand 8	A	185	189	anti-parallel
Strand 9	A	192	196	anti-parallel
Strand 10	A	200	206	anti-parallel
Strand 11	A	210	217	anti-parallel
Strand 12	A	273	277	anti-parallel
Strand 13	A	321	324	anti-parallel
Strand 14	A	329	331	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	284	287	first strand
Strand 2	a	310	313	parallel
Strand 3	a	335	337	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	165	171	parallel
Strand 3	A	153	160	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	148	149	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	132	135	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	287	first strand
Strand 2	A	310	313	parallel
Strand 3	A	335	337	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	7	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	77	82	anti-parallel
Strand 4	M	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	109	113	parallel
Strand 3	M	91	98	anti-parallel
Strand 4	M	33	39	anti-parallel
Strand 5	M	45	51	anti-parallel
Strand 6	M	57	59	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	109	113	parallel
Strand 3	M	91	98	anti-parallel
Strand 4	M	102	105	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	70	75	anti-parallel
Strand 4	N	62	66	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	103	106	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	53	54	first strand
Strand 2	N	45	49	anti-parallel
Strand 3	N	33	38	anti-parallel
Strand 4	N	85	90	anti-parallel
Strand 5	N	97	98	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1	7	first strand
Strand 2	B	12	22	anti-parallel
Strand 3	b	12	22	anti-parallel
Strand 4	b	2	7	anti-parallel
Strand 5	B	1	7	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	B	166	171	parallel
Strand 3	B	153	158	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	132	135	parallel
Strand 3	B	56	58	parallel
Strand 4	B	148	150	parallel

Back to list of sheets
Back to top of page

There are 13 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	324	first strand
Strand 2	B	273	277	anti-parallel
Strand 3	B	210	217	anti-parallel
Strand 4	B	200	206	anti-parallel
Strand 5	B	192	196	anti-parallel
Strand 6	B	185	189	anti-parallel
Strand 7	b	185	189	anti-parallel
Strand 8	b	192	196	anti-parallel
Strand 9	b	201	206	anti-parallel
Strand 10	b	210	217	anti-parallel
Strand 11	b	273	277	anti-parallel
Strand 12	b	321	325	anti-parallel
Strand 13	b	328	331	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	287	first strand
Strand 2	B	311	313	parallel
Strand 3	B	336	337	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	34	36	first strand
Strand 2	b	167	171	parallel
Strand 3	b	153	155	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	87	89	first strand
Strand 2	b	132	135	parallel
Strand 3	b	56	57	parallel
Strand 4	b	148	149	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	285	287	first strand
Strand 2	b	311	313	parallel
Strand 3	b	335	337	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	3	7	first strand
Strand 2	m	18	25	anti-parallel
Strand 3	m	77	82	anti-parallel
Strand 4	m	68	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	10	12	first strand
Strand 2	m	109	113	parallel
Strand 3	m	91	98	anti-parallel
Strand 4	m	33	39	anti-parallel
Strand 5	m	45	51	anti-parallel
Strand 6	m	57	59	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	10	12	first strand
Strand 2	m	109	113	parallel
Strand 3	m	91	98	anti-parallel
Strand 4	m	102	105	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	4	7	first strand
Strand 2	n	19	25	anti-parallel
Strand 3	n	70	75	anti-parallel
Strand 4	n	62	64	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	10	13	first strand
Strand 2	n	102	106	parallel
Strand 3	n	85	90	anti-parallel
Strand 4	n	33	38	anti-parallel
Strand 5	n	45	48	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	10	13	first strand
Strand 2	n	102	106	parallel
Strand 3	n	85	90	anti-parallel
Strand 4	n	97	98	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JKF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JKF