Analysis of interatomic Contacts of Structural Units in PDB entry:
8JKK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JKK entry

There are 10 chains in PDB entry 8JKK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 17	THR 415
B	C 1	C 5
B	G 7	G 12
C	C 1	G 12
D	LEU 17	GLU 412
E	C 1	C 5
E	G 7	G 12
F	C 1	G 12
G	LEU 17	THR 415
H	C 1	C 5

There are 64 helices in PDB entry 8JKK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	40	Right-handed alpha
Helix 2	AA2	A	49	54	Right-handed alpha
Helix 3	AA3	A	54	72	Right-handed alpha
Helix 4	AA4	A	81	89	Right-handed alpha
Helix 5	AA5	A	97	108	Right-handed alpha
Helix 6	AA6	A	145	162	Right-handed alpha
Helix 7	AA7	A	165	174	Right-handed alpha
Helix 8	AA8	A	203	211	Right-handed 310
Helix 9	AA9	A	242	246	Right-handed 310
Helix 10	AB1	A	250	259	Right-handed alpha
Helix 11	AB2	A	259	274	Right-handed alpha
Helix 12	AB3	A	274	291	Right-handed alpha
Helix 13	AB4	A	292	295	Right-handed 310
Helix 14	AB5	A	297	306	Right-handed alpha
Helix 15	AB6	A	353	356	Right-handed 310
Helix 16	AB7	A	393	401	Right-handed alpha
Helix 17	AB8	A	409	415	Right-handed 310
Helix 18	AB9	D	18	40	Right-handed alpha
Helix 19	AC1	D	49	54	Right-handed alpha
Helix 20	AC2	D	54	72	Right-handed alpha
Helix 21	AC3	D	81	89	Right-handed alpha
Helix 22	AC4	D	97	108	Right-handed alpha
Helix 23	AC5	D	145	160	Right-handed alpha
Helix 24	AC6	D	165	186	Right-handed alpha
Helix 25	AC7	D	203	211	Right-handed 310
Helix 26	AC8	D	242	246	Right-handed 310
Helix 27	AC9	D	250	259	Right-handed alpha
Helix 28	AD1	D	259	274	Right-handed alpha
Helix 29	AD2	D	274	291	Right-handed alpha
Helix 30	AD3	D	292	295	Right-handed 310
Helix 31	AD4	D	297	306	Right-handed alpha
Helix 32	AD5	D	353	356	Right-handed 310
Helix 33	AD6	D	393	401	Right-handed alpha
Helix 34	AD7	G	18	40	Right-handed alpha
Helix 35	AD8	G	54	72	Right-handed alpha
Helix 36	AD9	G	81	89	Right-handed alpha
Helix 37	AE1	G	97	108	Right-handed alpha
Helix 38	AE2	G	145	162	Right-handed alpha
Helix 39	AE3	G	165	174	Right-handed alpha
Helix 40	AE4	G	203	211	Right-handed 310
Helix 41	AE5	G	242	246	Right-handed 310
Helix 42	AE6	G	250	259	Right-handed alpha
Helix 43	AE7	G	259	274	Right-handed alpha
Helix 44	AE8	G	274	291	Right-handed alpha
Helix 45	AE9	G	292	295	Right-handed 310
Helix 46	AF1	G	297	306	Right-handed alpha
Helix 47	AF2	G	353	356	Right-handed 310
Helix 48	AF3	G	393	400	Right-handed alpha
Helix 49	AF4	G	409	415	Right-handed 310
Helix 50	AF5	J	18	40	Right-handed alpha
Helix 51	AF6	J	54	72	Right-handed alpha
Helix 52	AF7	J	81	89	Right-handed alpha
Helix 53	AF8	J	97	108	Right-handed alpha
Helix 54	AF9	J	145	161	Right-handed alpha
Helix 55	AG1	J	165	183	Right-handed alpha
Helix 56	AG2	J	203	211	Right-handed 310
Helix 57	AG3	J	242	246	Right-handed 310
Helix 58	AG4	J	250	259	Right-handed alpha
Helix 59	AG5	J	259	274	Right-handed alpha
Helix 60	AG6	J	274	291	Right-handed alpha
Helix 61	AG7	J	297	306	Right-handed alpha
Helix 62	AG8	J	353	356	Right-handed 310
Helix 63	AG9	J	393	401	Right-handed alpha
Helix 64	AH1	J	409	415	Right-handed 310

There are 12 sheets in PDB entry 8JKK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	77	first strand
Strand 2	A	126	129	parallel
Strand 3	A	135	140	anti-parallel
Strand 4	A	366	369	anti-parallel
Strand 5	A	337	344	anti-parallel
Strand 6	A	384	391	anti-parallel
Strand 7	A	314	319	anti-parallel
Strand 8	A	221	225	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	326	first strand
Strand 2	A	376	378	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	352	first strand
Strand 2	A	357	360	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	77	first strand
Strand 2	D	126	129	parallel
Strand 3	D	135	140	anti-parallel
Strand 4	D	366	369	anti-parallel
Strand 5	D	337	344	anti-parallel
Strand 6	D	384	391	anti-parallel
Strand 7	D	314	319	anti-parallel
Strand 8	D	221	225	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	326	first strand
Strand 2	D	376	378	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	352	first strand
Strand 2	D	357	360	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	77	first strand
Strand 2	G	126	129	parallel
Strand 3	G	135	140	anti-parallel
Strand 4	G	365	369	anti-parallel
Strand 5	G	337	344	anti-parallel
Strand 6	G	384	391	anti-parallel
Strand 7	G	314	319	anti-parallel
Strand 8	G	221	225	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	323	326	first strand
Strand 2	G	376	378	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	349	352	first strand
Strand 2	G	357	360	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	75	77	first strand
Strand 2	J	126	129	parallel
Strand 3	J	135	140	anti-parallel
Strand 4	J	366	369	anti-parallel
Strand 5	J	337	344	anti-parallel
Strand 6	J	384	391	anti-parallel
Strand 7	J	314	319	anti-parallel
Strand 8	J	221	225	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	323	326	first strand
Strand 2	J	376	378	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	349	352	first strand
Strand 2	J	357	360	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JKK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JKK