Analysis of interatomic Contacts of Structural Units in PDB entry:
8JKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JKM entry

There are 4 chains in PDB entry 8JKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 148SER 786
B
 VAL 148SER 786
C
 VAL 148SER 786
D
 VAL 148SER 786
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are124 helices in PDB entry 8JKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
150 161Right-handed alpha
Helix 2
AA2
A
163 176Right-handed alpha
Helix 3
AA3
A
182 186Right-handed 310
Helix 4
AA4
A
193 201Right-handed alpha
Helix 5
AA5
A
209 215Right-handed alpha
Helix 6
AA6
A
215 221Right-handed alpha
Helix 7
AA7
A
223 228Right-handed alpha
Helix 8
AA8
A
240 248Right-handed alpha
Helix 9
AA9
A
250 261Right-handed alpha
Helix 10
AB1
A
270 274Right-handed 310
Helix 11
AB2
A
275 279Right-handed 310
Helix 12
AB3
A
287 295Right-handed alpha
Helix 13
AB4
A
297 307Right-handed alpha
Helix 14
AB5
A
322 331Right-handed alpha
Helix 15
AB6
A
335 357Right-handed alpha
Helix 16
AB7
A
372 380Right-handed alpha
Helix 17
AB8
A
382 391Right-handed alpha
Helix 18
AB9
A
396 400Right-handed 310
Helix 19
AC1
A
432 439Right-handed alpha
Helix 20
AC2
A
445 450Right-handed alpha
Helix 21
AC3
A
452 466Right-handed alpha
Helix 22
AC4
A
466 491Right-handed alpha
Helix 23
AC5
A
504 531Right-handed alpha
Helix 24
AC6
A
550 569Right-handed alpha
Helix 25
AC7
A
575 594Right-handed alpha
Helix 26
AC8
A
595 599Right-handed 310
Helix 27
AC9
A
600 636Right-handed alpha
Helix 28
AD1
A
666 680Right-handed alpha
Helix 29
AD2
A
697 726Right-handed alpha
Helix 30
AD3
A
727 730Right-handed 310
Helix 31
AD4
A
731 748Right-handed alpha
Helix 32
AD5
B
150 161Right-handed alpha
Helix 33
AD6
B
163 176Right-handed alpha
Helix 34
AD7
B
182 186Right-handed 310
Helix 35
AD8
B
193 201Right-handed alpha
Helix 36
AD9
B
209 215Right-handed alpha
Helix 37
AE1
B
215 221Right-handed alpha
Helix 38
AE2
B
223 228Right-handed alpha
Helix 39
AE3
B
240 248Right-handed alpha
Helix 40
AE4
B
250 261Right-handed alpha
Helix 41
AE5
B
270 274Right-handed 310
Helix 42
AE6
B
275 279Right-handed 310
Helix 43
AE7
B
287 295Right-handed alpha
Helix 44
AE8
B
297 307Right-handed alpha
Helix 45
AE9
B
322 331Right-handed alpha
Helix 46
AF1
B
335 357Right-handed alpha
Helix 47
AF2
B
372 380Right-handed alpha
Helix 48
AF3
B
382 391Right-handed alpha
Helix 49
AF4
B
396 400Right-handed 310
Helix 50
AF5
B
432 439Right-handed alpha
Helix 51
AF6
B
445 450Right-handed alpha
Helix 52
AF7
B
452 466Right-handed alpha
Helix 53
AF8
B
466 491Right-handed alpha
Helix 54
AF9
B
504 531Right-handed alpha
Helix 55
AG1
B
550 569Right-handed alpha
Helix 56
AG2
B
575 594Right-handed alpha
Helix 57
AG3
B
595 599Right-handed 310
Helix 58
AG4
B
600 636Right-handed alpha
Helix 59
AG5
B
666 680Right-handed alpha
Helix 60
AG6
B
697 726Right-handed alpha
Helix 61
AG7
B
727 730Right-handed 310
Helix 62
AG8
B
731 748Right-handed alpha
Helix 63
AG9
C
150 161Right-handed alpha
Helix 64
AH1
C
163 176Right-handed alpha
Helix 65
AH2
C
182 186Right-handed 310
Helix 66
AH3
C
193 201Right-handed alpha
Helix 67
AH4
C
209 215Right-handed alpha
Helix 68
AH5
C
215 221Right-handed alpha
Helix 69
AH6
C
223 228Right-handed alpha
Helix 70
AH7
C
240 248Right-handed alpha
Helix 71
AH8
C
250 261Right-handed alpha
Helix 72
AH9
C
270 274Right-handed 310
Helix 73
AI1
C
275 279Right-handed 310
Helix 74
AI2
C
287 295Right-handed alpha
Helix 75
AI3
C
297 307Right-handed alpha
Helix 76
AI4
C
322 331Right-handed alpha
Helix 77
AI5
C
335 357Right-handed alpha
Helix 78
AI6
C
372 380Right-handed alpha
Helix 79
AI7
C
382 391Right-handed alpha
Helix 80
AI8
C
396 400Right-handed 310
Helix 81
AI9
C
432 439Right-handed alpha
Helix 82
AJ1
C
445 450Right-handed alpha
Helix 83
AJ2
C
452 466Right-handed alpha
Helix 84
AJ3
C
466 491Right-handed alpha
Helix 85
AJ4
C
504 531Right-handed alpha
Helix 86
AJ5
C
550 569Right-handed alpha
Helix 87
AJ6
C
575 594Right-handed alpha
Helix 88
AJ7
C
595 599Right-handed 310
Helix 89
AJ8
C
600 636Right-handed alpha
Helix 90
AJ9
C
666 680Right-handed alpha
Helix 91
AK1
C
697 726Right-handed alpha
Helix 92
AK2
C
727 730Right-handed 310
Helix 93
AK3
C
731 748Right-handed alpha
Helix 94
AK4
D
150 161Right-handed alpha
Helix 95
AK5
D
163 176Right-handed alpha
Helix 96
AK6
D
182 186Right-handed 310
Helix 97
AK7
D
193 201Right-handed alpha
Helix 98
AK8
D
209 215Right-handed alpha
Helix 99
AK9
D
215 221Right-handed alpha
Helix 100
AL1
D
223 228Right-handed alpha
Helix 101
AL2
D
240 248Right-handed alpha
Helix 102
AL3
D
250 261Right-handed alpha
Helix 103
AL4
D
270 274Right-handed 310
Helix 104
AL5
D
275 279Right-handed 310
Helix 105
AL6
D
287 295Right-handed alpha
Helix 106
AL7
D
297 307Right-handed alpha
Helix 107
AL8
D
322 331Right-handed alpha
Helix 108
AL9
D
335 357Right-handed alpha
Helix 109
AM1
D
372 380Right-handed alpha
Helix 110
AM2
D
382 391Right-handed alpha
Helix 111
AM3
D
396 400Right-handed 310
Helix 112
AM4
D
432 439Right-handed alpha
Helix 113
AM5
D
445 450Right-handed alpha
Helix 114
AM6
D
452 466Right-handed alpha
Helix 115
AM7
D
466 491Right-handed alpha
Helix 116
AM8
D
504 531Right-handed alpha
Helix 117
AM9
D
550 569Right-handed alpha
Helix 118
AN1
D
575 594Right-handed alpha
Helix 119
AN2
D
595 599Right-handed 310
Helix 120
AN3
D
600 636Right-handed alpha
Helix 121
AN4
D
666 680Right-handed alpha
Helix 122
AN5
D
697 726Right-handed alpha
Helix 123
AN6
D
727 730Right-handed 310
Helix 124
AN7
D
731 748Right-handed alpha
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There are 4 sheets in PDB entry 8JKM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 410first strand
Strand 2
A
414 419anti-parallel
Strand 3
A
778 783anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
405 410first strand
Strand 2
B
414 419anti-parallel
Strand 3
B
778 783anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
405 410first strand
Strand 2
C
414 419anti-parallel
Strand 3
C
778 783anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
405 410first strand
Strand 2
D
414 419anti-parallel
Strand 3
D
778 783anti-parallel
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