Analysis of interatomic Contacts of Structural Units in PDB entry:
8JKT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JKT entry

There are 4 chains in PDB entry 8JKT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	SER 904
B	PRO 5	SER 905
C	PRO 5	SER 904
D	PRO 5	SER 904

There are165 helices in PDB entry 8JKT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	8	Right-handed 310
Helix 2	AA2	A	152	156	Right-handed 310
Helix 3	AA3	A	212	216	Right-handed 310
Helix 4	AA4	A	241	247	Right-handed alpha
Helix 5	AA5	A	250	268	Right-handed alpha
Helix 6	AA6	A	300	304	Right-handed alpha
Helix 7	AA7	A	311	331	Right-handed alpha
Helix 8	AA8	A	339	342	Right-handed 310
Helix 9	AA9	A	343	362	Right-handed alpha
Helix 10	AB1	A	363	369	Right-handed 310
Helix 11	AB2	A	370	375	Right-handed alpha
Helix 12	AB3	A	375	384	Right-handed alpha
Helix 13	AB4	A	394	398	Right-handed 310
Helix 14	AB5	A	400	407	Right-handed alpha
Helix 15	AB6	A	409	428	Right-handed alpha
Helix 16	AB7	A	428	444	Right-handed alpha
Helix 17	AB8	A	451	463	Right-handed alpha
Helix 18	AB9	A	472	482	Right-handed alpha
Helix 19	AC1	A	548	551	Right-handed 310
Helix 20	AC2	A	562	565	Right-handed 310
Helix 21	AC3	A	573	588	Right-handed alpha
Helix 22	AC4	A	589	591	Right-handed 310
Helix 23	AC5	A	592	609	Right-handed alpha
Helix 24	AC6	A	613	620	Right-handed alpha
Helix 25	AC7	A	621	627	Right-handed 310
Helix 26	AC8	A	629	648	Right-handed alpha
Helix 27	AC9	A	652	675	Right-handed alpha
Helix 28	AD1	A	684	701	Right-handed alpha
Helix 29	AD2	A	703	720	Right-handed alpha
Helix 30	AD3	A	727	742	Right-handed alpha
Helix 31	AD4	A	743	756	Right-handed alpha
Helix 32	AD5	A	759	770	Right-handed alpha
Helix 33	AD6	A	771	773	Right-handed 310
Helix 34	AD7	A	775	786	Right-handed alpha
Helix 35	AD8	A	793	795	Right-handed 310
Helix 36	AD9	A	796	807	Right-handed alpha
Helix 37	AE1	A	809	821	Right-handed alpha
Helix 38	AE2	A	821	830	Right-handed alpha
Helix 39	AE3	A	834	845	Right-handed alpha
Helix 40	AE4	A	849	863	Right-handed alpha
Helix 41	AE5	A	868	870	Right-handed 310
Helix 42	AE6	A	871	903	Right-handed alpha
Helix 43	AE7	B	152	156	Right-handed 310
Helix 44	AE8	B	212	216	Right-handed 310
Helix 45	AE9	B	241	247	Right-handed alpha
Helix 46	AF1	B	250	268	Right-handed alpha
Helix 47	AF2	B	300	304	Right-handed alpha
Helix 48	AF3	B	311	331	Right-handed alpha
Helix 49	AF4	B	339	342	Right-handed 310
Helix 50	AF5	B	343	362	Right-handed alpha
Helix 51	AF6	B	363	369	Right-handed 310
Helix 52	AF7	B	370	375	Right-handed alpha
Helix 53	AF8	B	375	384	Right-handed alpha
Helix 54	AF9	B	394	398	Right-handed 310
Helix 55	AG1	B	400	407	Right-handed alpha
Helix 56	AG2	B	409	427	Right-handed alpha
Helix 57	AG3	B	428	444	Right-handed alpha
Helix 58	AG4	B	449	463	Right-handed alpha
Helix 59	AG5	B	472	482	Right-handed alpha
Helix 60	AG6	B	548	551	Right-handed 310
Helix 61	AG7	B	562	565	Right-handed 310
Helix 62	AG8	B	573	588	Right-handed alpha
Helix 63	AG9	B	589	591	Right-handed 310
Helix 64	AH1	B	592	609	Right-handed alpha
Helix 65	AH2	B	613	620	Right-handed alpha
Helix 66	AH3	B	621	627	Right-handed 310
Helix 67	AH4	B	629	648	Right-handed alpha
Helix 68	AH5	B	652	675	Right-handed alpha
Helix 69	AH6	B	684	702	Right-handed alpha
Helix 70	AH7	B	703	720	Right-handed alpha
Helix 71	AH8	B	727	729	Right-handed 310
Helix 72	AH9	B	730	742	Right-handed alpha
Helix 73	AI1	B	743	756	Right-handed alpha
Helix 74	AI2	B	759	771	Right-handed alpha
Helix 75	AI3	B	775	786	Right-handed alpha
Helix 76	AI4	B	793	795	Right-handed 310
Helix 77	AI5	B	796	807	Right-handed alpha
Helix 78	AI6	B	809	821	Right-handed alpha
Helix 79	AI7	B	821	830	Right-handed alpha
Helix 80	AI8	B	834	845	Right-handed alpha
Helix 81	AI9	B	849	863	Right-handed alpha
Helix 82	AJ1	B	868	870	Right-handed 310
Helix 83	AJ2	B	871	904	Right-handed alpha
Helix 84	AJ3	C	152	156	Right-handed 310
Helix 85	AJ4	C	212	216	Right-handed 310
Helix 86	AJ5	C	241	247	Right-handed alpha
Helix 87	AJ6	C	250	268	Right-handed alpha
Helix 88	AJ7	C	300	304	Right-handed alpha
Helix 89	AJ8	C	311	328	Right-handed alpha
Helix 90	AJ9	C	339	342	Right-handed 310
Helix 91	AK1	C	343	362	Right-handed alpha
Helix 92	AK2	C	363	369	Right-handed 310
Helix 93	AK3	C	370	375	Right-handed alpha
Helix 94	AK4	C	375	384	Right-handed alpha
Helix 95	AK5	C	394	398	Right-handed 310
Helix 96	AK6	C	400	407	Right-handed alpha
Helix 97	AK7	C	409	427	Right-handed alpha
Helix 98	AK8	C	428	444	Right-handed alpha
Helix 99	AK9	C	449	463	Right-handed alpha
Helix 100	AL1	C	472	482	Right-handed alpha
Helix 101	AL2	C	548	551	Right-handed 310
Helix 102	AL3	C	562	565	Right-handed 310
Helix 103	AL4	C	573	588	Right-handed alpha
Helix 104	AL5	C	589	591	Right-handed 310
Helix 105	AL6	C	592	609	Right-handed alpha
Helix 106	AL7	C	613	620	Right-handed alpha
Helix 107	AL8	C	621	627	Right-handed 310
Helix 108	AL9	C	629	648	Right-handed alpha
Helix 109	AM1	C	652	675	Right-handed alpha
Helix 110	AM2	C	684	701	Right-handed alpha
Helix 111	AM3	C	703	720	Right-handed alpha
Helix 112	AM4	C	727	742	Right-handed alpha
Helix 113	AM5	C	743	757	Right-handed alpha
Helix 114	AM6	C	759	770	Right-handed alpha
Helix 115	AM7	C	771	773	Right-handed 310
Helix 116	AM8	C	775	786	Right-handed alpha
Helix 117	AM9	C	793	795	Right-handed 310
Helix 118	AN1	C	796	807	Right-handed alpha
Helix 119	AN2	C	809	821	Right-handed alpha
Helix 120	AN3	C	821	830	Right-handed alpha
Helix 121	AN4	C	834	845	Right-handed alpha
Helix 122	AN5	C	849	863	Right-handed alpha
Helix 123	AN6	C	868	870	Right-handed 310
Helix 124	AN7	C	871	903	Right-handed alpha
Helix 125	AN8	D	152	156	Right-handed 310
Helix 126	AN9	D	212	216	Right-handed 310
Helix 127	AO1	D	241	247	Right-handed alpha
Helix 128	AO2	D	250	268	Right-handed alpha
Helix 129	AO3	D	300	304	Right-handed alpha
Helix 130	AO4	D	311	331	Right-handed alpha
Helix 131	AO5	D	339	342	Right-handed 310
Helix 132	AO6	D	343	362	Right-handed alpha
Helix 133	AO7	D	363	369	Right-handed 310
Helix 134	AO8	D	370	375	Right-handed alpha
Helix 135	AO9	D	375	384	Right-handed alpha
Helix 136	AP1	D	394	398	Right-handed 310
Helix 137	AP2	D	400	407	Right-handed alpha
Helix 138	AP3	D	409	427	Right-handed alpha
Helix 139	AP4	D	428	444	Right-handed alpha
Helix 140	AP5	D	449	464	Right-handed alpha
Helix 141	AP6	D	472	482	Right-handed alpha
Helix 142	AP7	D	548	551	Right-handed 310
Helix 143	AP8	D	562	565	Right-handed 310
Helix 144	AP9	D	573	588	Right-handed alpha
Helix 145	AQ1	D	589	591	Right-handed 310
Helix 146	AQ2	D	592	609	Right-handed alpha
Helix 147	AQ3	D	613	620	Right-handed alpha
Helix 148	AQ4	D	621	627	Right-handed 310
Helix 149	AQ5	D	629	648	Right-handed alpha
Helix 150	AQ6	D	652	675	Right-handed alpha
Helix 151	AQ7	D	684	701	Right-handed alpha
Helix 152	AQ8	D	703	720	Right-handed alpha
Helix 153	AQ9	D	727	729	Right-handed 310
Helix 154	AR1	D	730	742	Right-handed alpha
Helix 155	AR2	D	743	757	Right-handed alpha
Helix 156	AR3	D	759	771	Right-handed alpha
Helix 157	AR4	D	775	786	Right-handed alpha
Helix 158	AR5	D	793	795	Right-handed 310
Helix 159	AR6	D	796	807	Right-handed alpha
Helix 160	AR7	D	809	821	Right-handed alpha
Helix 161	AR8	D	821	830	Right-handed alpha
Helix 162	AR9	D	834	845	Right-handed alpha
Helix 163	AS1	D	849	863	Right-handed alpha
Helix 164	AS2	D	868	870	Right-handed 310
Helix 165	AS3	D	871	904	Right-handed alpha

There are 40 sheets in PDB entry 8JKT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	111	121	anti-parallel
Strand 3	A	72	76	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	111	121	anti-parallel
Strand 3	A	37	48	anti-parallel
Strand 4	A	15	26	anti-parallel
Strand 5	A	168	176	parallel
Strand 6	A	197	204	anti-parallel
Strand 7	A	192	194	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	58	first strand
Strand 2	A	97	102	anti-parallel
Strand 3	A	86	92	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	136	first strand
Strand 2	A	139	147	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	183	first strand
Strand 2	A	218	221	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	229	first strand
Strand 2	A	235	240	anti-parallel
Strand 3	A	276	282	parallel
Strand 4	A	295	299	parallel
Strand 5	A	289	290	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	446	448	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	546	first strand
Strand 2	A	497	502	anti-parallel
Strand 3	A	487	491	anti-parallel
Strand 4	A	569	572	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	525	first strand
Strand 2	A	537	539	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	532	533	first strand
Strand 2	A	527	529	anti-parallel
Strand 3	A	558	560	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	111	121	anti-parallel
Strand 3	B	72	76	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	111	121	anti-parallel
Strand 3	B	37	48	anti-parallel
Strand 4	B	15	27	anti-parallel
Strand 5	B	168	176	parallel
Strand 6	B	200	204	anti-parallel
Strand 7	B	192	193	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	58	first strand
Strand 2	B	97	102	anti-parallel
Strand 3	B	86	92	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	136	first strand
Strand 2	B	139	147	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	183	first strand
Strand 2	B	218	221	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	229	first strand
Strand 2	B	235	240	anti-parallel
Strand 3	B	276	282	parallel
Strand 4	B	295	299	parallel
Strand 5	B	289	290	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	337	first strand
Strand 2	B	446	448	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	546	first strand
Strand 2	B	497	502	anti-parallel
Strand 3	B	487	492	anti-parallel
Strand 4	B	569	572	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	525	first strand
Strand 2	B	537	539	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	532	533	first strand
Strand 2	B	527	529	anti-parallel
Strand 3	B	558	560	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	111	121	anti-parallel
Strand 3	C	73	77	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	111	121	anti-parallel
Strand 3	C	37	48	anti-parallel
Strand 4	C	15	26	anti-parallel
Strand 5	C	168	176	parallel
Strand 6	C	200	204	anti-parallel
Strand 7	C	192	193	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	58	first strand
Strand 2	C	97	102	anti-parallel
Strand 3	C	86	92	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	136	first strand
Strand 2	C	139	147	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	183	first strand
Strand 2	C	218	221	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	229	first strand
Strand 2	C	235	240	anti-parallel
Strand 3	C	276	282	parallel
Strand 4	C	295	299	parallel
Strand 5	C	289	290	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	337	first strand
Strand 2	C	446	448	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	544	546	first strand
Strand 2	C	497	502	anti-parallel
Strand 3	C	487	491	anti-parallel
Strand 4	C	569	572	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	523	525	first strand
Strand 2	C	537	539	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	532	533	first strand
Strand 2	C	527	529	anti-parallel
Strand 3	C	558	560	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	111	121	anti-parallel
Strand 3	D	72	76	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	111	121	anti-parallel
Strand 3	D	37	48	anti-parallel
Strand 4	D	15	26	anti-parallel
Strand 5	D	168	176	parallel
Strand 6	D	197	204	anti-parallel
Strand 7	D	192	194	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	58	first strand
Strand 2	D	97	102	anti-parallel
Strand 3	D	86	92	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	136	first strand
Strand 2	D	139	147	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	183	first strand
Strand 2	D	218	221	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	229	first strand
Strand 2	D	235	240	anti-parallel
Strand 3	D	276	282	parallel
Strand 4	D	295	299	parallel
Strand 5	D	289	290	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	337	first strand
Strand 2	D	446	448	parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	544	546	first strand
Strand 2	D	497	502	anti-parallel
Strand 3	D	487	491	anti-parallel
Strand 4	D	569	572	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	522	525	first strand
Strand 2	D	537	540	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	532	533	first strand
Strand 2	D	527	529	anti-parallel
Strand 3	D	558	560	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JKT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JKT