Analysis of interatomic Contacts of Structural Units in PDB entry:
8JKZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JKZ entry

There are 2 chains in PDB entry 8JKZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 584
B	LEU 5	MET 473

There are 40 helices in PDB entry 8JKZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	16	Right-handed alpha
Helix 2	AA2	A	25	33	Right-handed 310
Helix 3	AA3	A	36	49	Right-handed alpha
Helix 4	AA4	A	65	78	Right-handed alpha
Helix 5	AA5	A	87	98	Right-handed alpha
Helix 6	AA6	A	100	112	Right-handed alpha
Helix 7	AA7	A	120	132	Right-handed alpha
Helix 8	AA8	A	145	156	Right-handed alpha
Helix 9	AA9	A	168	176	Right-handed alpha
Helix 10	AB1	A	190	195	Right-handed alpha
Helix 11	AB2	A	198	217	Right-handed alpha
Helix 12	AB3	A	231	243	Right-handed alpha
Helix 13	AB4	A	257	261	Right-handed 310
Helix 14	AB5	A	262	276	Right-handed alpha
Helix 15	AB6	A	286	297	Right-handed alpha
Helix 16	AB7	A	302	310	Right-handed alpha
Helix 17	AB8	A	355	366	Right-handed alpha
Helix 18	AB9	A	383	390	Right-handed alpha
Helix 19	AC1	A	406	414	Right-handed alpha
Helix 20	AC2	A	415	431	Right-handed alpha
Helix 21	AC3	A	439	443	Right-handed 310
Helix 22	AC4	A	455	457	Right-handed 310
Helix 23	AC5	A	458	466	Right-handed alpha
Helix 24	AC6	A	517	529	Right-handed alpha
Helix 25	AC7	A	532	548	Right-handed alpha
Helix 26	AC8	B	29	37	Right-handed alpha
Helix 27	AC9	B	60	71	Right-handed alpha
Helix 28	AD1	B	102	106	Right-handed 310
Helix 29	AD2	B	112	119	Right-handed alpha
Helix 30	AD3	B	122	138	Right-handed alpha
Helix 31	AD4	B	151	156	Right-handed alpha
Helix 32	AD5	B	164	174	Right-handed alpha
Helix 33	AD6	B	175	177	Right-handed 310
Helix 34	AD7	B	184	189	Right-handed alpha
Helix 35	AD8	B	192	209	Right-handed alpha
Helix 36	AD9	B	235	237	Right-handed 310
Helix 37	AE1	B	276	295	Right-handed alpha
Helix 38	AE2	B	312	321	Right-handed alpha
Helix 39	AE3	B	417	430	Right-handed alpha
Helix 40	AE4	B	443	458	Right-handed alpha

There are 11 sheets in PDB entry 8JKZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	184	first strand
Strand 2	A	137	140	parallel
Strand 3	A	20	23	parallel
Strand 4	A	220	221	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	279	280	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	580	first strand
Strand 2	A	330	332	anti-parallel
Strand 3	B	343	346	anti-parallel
Strand 4	B	355	356	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	338	first strand
Strand 2	A	501	511	anti-parallel
Strand 3	A	485	496	anti-parallel
Strand 4	A	475	477	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	380	first strand
Strand 2	A	342	347	anti-parallel
Strand 3	A	402	405	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	561	first strand
Strand 2	A	569	571	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	365	368	anti-parallel
Strand 3	B	373	376	anti-parallel
Strand 4	B	407	411	anti-parallel
Strand 5	B	328	335	anti-parallel
Strand 6	B	302	307	parallel
Strand 7	B	222	228	parallel
Strand 8	B	239	248	anti-parallel
Strand 9	B	231	233	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	365	368	anti-parallel
Strand 3	B	373	376	anti-parallel
Strand 4	B	407	411	anti-parallel
Strand 5	B	328	335	anti-parallel
Strand 6	B	302	307	parallel
Strand 7	B	222	228	parallel
Strand 8	B	239	248	anti-parallel
Strand 9	B	257	262	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	19	21	anti-parallel
Strand 3	B	214	215	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	50	55	parallel
Strand 3	B	145	149	parallel
Strand 4	B	180	183	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	267	first strand
Strand 2	B	273	275	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JKZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JKZ