Analysis of interatomic Contacts of Structural Units in PDB entry:
8JL0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JL0 entry

There are 4 chains in PDB entry 8JL0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 584
B	LEU 5	MET 473
D	A 1	T 22
C	A 1	U 22

There are 41 helices in PDB entry 8JL0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	16	Right-handed alpha
Helix 2	AA2	A	26	31	Right-handed alpha
Helix 3	AA3	A	36	50	Right-handed alpha
Helix 4	AA4	A	67	79	Right-handed alpha
Helix 5	AA5	A	87	98	Right-handed alpha
Helix 6	AA6	A	100	109	Right-handed alpha
Helix 7	AA7	A	120	132	Right-handed alpha
Helix 8	AA8	A	145	156	Right-handed alpha
Helix 9	AA9	A	169	176	Right-handed alpha
Helix 10	AB1	A	200	219	Right-handed alpha
Helix 11	AB2	A	231	243	Right-handed alpha
Helix 12	AB3	A	257	261	Right-handed 310
Helix 13	AB4	A	262	276	Right-handed alpha
Helix 14	AB5	A	286	297	Right-handed alpha
Helix 15	AB6	A	302	310	Right-handed alpha
Helix 16	AB7	A	355	366	Right-handed alpha
Helix 17	AB8	A	383	391	Right-handed alpha
Helix 18	AB9	A	406	414	Right-handed alpha
Helix 19	AC1	A	414	431	Right-handed alpha
Helix 20	AC2	A	455	457	Right-handed 310
Helix 21	AC3	A	458	465	Right-handed alpha
Helix 22	AC4	A	513	519	Right-handed 310
Helix 23	AC5	A	520	528	Right-handed alpha
Helix 24	AC6	A	532	549	Right-handed alpha
Helix 25	AC7	B	29	37	Right-handed alpha
Helix 26	AC8	B	39	43	Right-handed 310
Helix 27	AC9	B	57	59	Right-handed 310
Helix 28	AD1	B	60	71	Right-handed alpha
Helix 29	AD2	B	89	94	Right-handed alpha
Helix 30	AD3	B	102	104	Right-handed 310
Helix 31	AD4	B	109	119	Right-handed alpha
Helix 32	AD5	B	122	134	Right-handed alpha
Helix 33	AD6	B	135	137	Right-handed 310
Helix 34	AD7	B	154	159	Right-handed alpha
Helix 35	AD8	B	164	174	Right-handed alpha
Helix 36	AD9	B	175	177	Right-handed 310
Helix 37	AE1	B	192	209	Right-handed alpha
Helix 38	AE2	B	276	295	Right-handed alpha
Helix 39	AE3	B	312	321	Right-handed alpha
Helix 40	AE4	B	417	430	Right-handed alpha
Helix 41	AE5	B	443	458	Right-handed alpha

There are 9 sheets in PDB entry 8JL0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	181	184	parallel
Strand 3	A	137	140	parallel
Strand 4	A	20	23	parallel
Strand 5	A	220	224	parallel
Strand 6	A	251	255	parallel
Strand 7	A	279	283	parallel

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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	356	first strand
Strand 2	B	343	346	anti-parallel
Strand 3	A	327	332	anti-parallel
Strand 4	A	579	582	anti-parallel
Strand 5	B	7	13	parallel
Strand 6	B	365	370	anti-parallel
Strand 7	B	373	376	anti-parallel
Strand 8	B	407	409	anti-parallel
Strand 9	B	328	335	anti-parallel
Strand 10	B	302	307	parallel
Strand 11	B	223	231	parallel
Strand 12	B	241	246	anti-parallel
Strand 13	B	256	259	anti-parallel
Strand 14	B	465	468	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	338	first strand
Strand 2	A	500	511	anti-parallel
Strand 3	A	486	497	anti-parallel
Strand 4	A	443	445	anti-parallel
Strand 5	A	438	440	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	338	first strand
Strand 2	A	500	511	anti-parallel
Strand 3	A	486	497	anti-parallel
Strand 4	A	475	476	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	374	first strand
Strand 2	A	378	381	anti-parallel
Strand 3	A	342	350	anti-parallel
Strand 4	A	396	405	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	561	first strand
Strand 2	A	569	571	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	19	20	anti-parallel
Strand 3	B	214	215	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	50	55	parallel
Strand 3	B	106	107	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	50	55	parallel
Strand 3	B	145	149	parallel
Strand 4	B	180	183	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JL0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JL0