Analysis of interatomic Contacts of Structural Units in PDB entry:
8JL8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JL8 entry

There is 1 chain in PDB entry 8JL8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 30ARG 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8JL8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 36Right-handed 310
Helix 2
AA2
A
117 120Right-handed 310
Helix 3
AA3
A
234 246Right-handed alpha
Helix 4
AA4
A
263 268Right-handed alpha
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There are 5 sheets in PDB entry 8JL8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 44first strand
Strand 2
A
53 60anti-parallel
Strand 3
A
123 137anti-parallel
Strand 4
A
83 87anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 44first strand
Strand 2
A
53 60anti-parallel
Strand 3
A
123 137anti-parallel
Strand 4
A
319 325anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
156 164parallel
Strand 3
A
145 153anti-parallel
Strand 4
A
72 77anti-parallel
Strand 5
A
110 115anti-parallel
Strand 6
A
99 106anti-parallel
Strand 7
A
90 96anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 181first strand
Strand 2
A
184 194anti-parallel
Strand 3
A
272 280anti-parallel
Strand 4
A
215 226anti-parallel
Strand 5
A
230 233anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 252first strand
Strand 2
A
257 262anti-parallel
Strand 3
A
205 211anti-parallel
Strand 4
A
287 296anti-parallel
Strand 5
A
304 314anti-parallel
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