Analysis of interatomic Contacts of Structural Units in PDB entry:
8JLE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JLE entry

There are 2 chains in PDB entry 8JLE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 480	VAL 587
B	THR 876	SER 1295

There are 6 helices in PDB entry 8JLE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	562	564	Right-handed 310
Helix 2	AA2	B	929	933	Right-handed 310
Helix 3	AA3	B	954	958	Right-handed 310
Helix 4	AA4	B	1080	1092	Right-handed alpha
Helix 5	AA5	B	1210	1215	Right-handed 310
Helix 6	AA6	B	1265	1273	Right-handed alpha

There are 10 sheets in PDB entry 8JLE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	492	first strand
Strand 2	A	500	512	parallel
Strand 3	A	515	527	parallel
Strand 4	A	530	532	first strand
Strand 5	A	550	552	parallel
Strand 6	A	570	572	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	567	first strand
Strand 2	A	545	547	parallel
Strand 3	A	515	527	parallel
Strand 4	A	500	512	parallel
Strand 5	A	535	542	first strand
Strand 6	A	555	559	parallel
Strand 7	A	574	577	parallel
Strand 8	B	1142	1144	anti-parallel
Strand 9	B	1150	1152	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	887	890	first strand
Strand 2	B	877	884	anti-parallel
Strand 3	B	1067	1075	anti-parallel
Strand 4	B	913	916	anti-parallel
Strand 5	B	905	906	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	887	890	first strand
Strand 2	B	877	884	anti-parallel
Strand 3	B	1067	1075	anti-parallel
Strand 4	B	941	948	anti-parallel
Strand 5	B	1015	1021	anti-parallel
Strand 6	B	1027	1031	anti-parallel
Strand 7	B	1034	1039	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	897	900	first strand
Strand 2	B	924	927	anti-parallel
Strand 3	B	1052	1055	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	962	966	first strand
Strand 2	B	973	979	anti-parallel
Strand 3	B	982	988	anti-parallel
Strand 4	B	994	1000	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1112	1115	first strand
Strand 2	B	1282	1285	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1122	1125	first strand
Strand 2	B	1134	1137	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1159	1164	first strand
Strand 2	B	1179	1186	anti-parallel
Strand 3	B	1220	1226	anti-parallel
Strand 4	B	1232	1240	anti-parallel
Strand 5	B	1246	1255	anti-parallel
Strand 6	B	1258	1264	anti-parallel
Strand 7	B	1204	1205	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1159	1164	first strand
Strand 2	B	1179	1186	anti-parallel
Strand 3	B	1189	1194	anti-parallel
Strand 4	B	1207	1209	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JLE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JLE