Analysis of interatomic Contacts of Structural Units in PDB entry:
8JLI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JLI entry

There are 2 chains in PDB entry 8JLI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 137GLN 742
B
 GLY 137GLN 742
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8JLI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
137 160Right-handed alpha
Helix 2
AA2
A
162 183Right-handed alpha
Helix 3
AA3
A
184 198Right-handed alpha
Helix 4
AA4
A
205 230Right-handed alpha
Helix 5
AA5
A
230 252Right-handed alpha
Helix 6
AA6
A
255 271Right-handed alpha
Helix 7
AA7
A
271 281Right-handed alpha
Helix 8
AA8
A
282 284Right-handed 310
Helix 9
AA9
A
288 295Right-handed alpha
Helix 10
AB1
A
297 315Right-handed alpha
Helix 11
AB2
A
331 352Right-handed alpha
Helix 12
AB3
A
357 364Right-handed alpha
Helix 13
AB4
A
367 386Right-handed alpha
Helix 14
AB5
A
422 439Right-handed alpha
Helix 15
AB6
A
444 482Right-handed alpha
Helix 16
AB7
A
562 564Right-handed 310
Helix 17
AB8
A
592 623Right-handed alpha
Helix 18
AB9
A
623 642Right-handed alpha
Helix 19
AC1
A
647 676Right-handed alpha
Helix 20
AC2
A
681 705Right-handed alpha
Helix 21
AC3
A
712 731Right-handed alpha
Helix 22
AC4
B
138 160Right-handed alpha
Helix 23
AC5
B
162 183Right-handed alpha
Helix 24
AC6
B
184 198Right-handed alpha
Helix 25
AC7
B
208 230Right-handed alpha
Helix 26
AC8
B
230 252Right-handed alpha
Helix 27
AC9
B
255 271Right-handed alpha
Helix 28
AD1
B
271 281Right-handed alpha
Helix 29
AD2
B
282 284Right-handed 310
Helix 30
AD3
B
288 295Right-handed alpha
Helix 31
AD4
B
297 315Right-handed alpha
Helix 32
AD5
B
331 352Right-handed alpha
Helix 33
AD6
B
357 364Right-handed alpha
Helix 34
AD7
B
367 386Right-handed alpha
Helix 35
AD8
B
422 439Right-handed alpha
Helix 36
AD9
B
444 483Right-handed alpha
Helix 37
AE1
B
562 564Right-handed 310
Helix 38
AE2
B
592 623Right-handed alpha
Helix 39
AE3
B
623 642Right-handed alpha
Helix 40
AE4
B
643 645Right-handed 310
Helix 41
AE5
B
647 676Right-handed alpha
Helix 42
AE6
B
681 705Right-handed alpha
Helix 43
AE7
B
712 731Right-handed alpha
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There are 6 sheets in PDB entry 8JLI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
329 330anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 496first strand
Strand 2
A
500 527parallel
Strand 3
A
530 532parallel
Strand 4
A
550 552parallel
Strand 5
A
570 572parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 567first strand
Strand 2
A
545 547parallel
Strand 3
A
500 527parallel
Strand 4
A
535 542parallel
Strand 5
A
555 559parallel
Strand 6
A
575 577parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 323first strand
Strand 2
B
329 330anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
485 496first strand
Strand 2
B
500 527parallel
Strand 3
B
530 532parallel
Strand 4
B
550 552parallel
Strand 5
B
570 572parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
566 567first strand
Strand 2
B
545 547parallel
Strand 3
B
500 527parallel
Strand 4
B
535 542parallel
Strand 5
B
555 559parallel
Strand 6
B
575 577parallel
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