Analysis of interatomic Contacts of Structural Units in PDB entry:
8JLV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JLV entry

There are 6 chains in PDB entry 8JLV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1LEU 264
A
 MET 1LEU 264
C
 MET 1LEU 264
D
 MET 1LEU 264
E
 MET 1LEU 264
F
 MET 1LEU 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 87 helices in PDB entry 8JLV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
35 38Right-handed 310
Helix 2
AA2
B
39 48Right-handed alpha
Helix 3
AA3
B
61 65Right-handed 310
Helix 4
AA4
B
68 72Right-handed 310
Helix 5
AA5
B
76 91Right-handed alpha
Helix 6
AA6
B
102 115Right-handed alpha
Helix 7
AA7
B
132 139Right-handed 310
Helix 8
AA8
B
143 159Right-handed alpha
Helix 9
AA9
B
166 169Right-handed 310
Helix 10
AB1
B
170 188Right-handed alpha
Helix 11
AB2
B
192 196Right-handed 310
Helix 12
AB3
B
221 230Right-handed alpha
Helix 13
AB4
B
243 248Right-handed alpha
Helix 14
AB5
B
248 262Right-handed alpha
Helix 15
AB6
A
35 38Right-handed 310
Helix 16
AB7
A
39 48Right-handed alpha
Helix 17
AB8
A
61 65Right-handed 310
Helix 18
AB9
A
68 72Right-handed 310
Helix 19
AC1
A
76 91Right-handed alpha
Helix 20
AC2
A
102 115Right-handed alpha
Helix 21
AC3
A
132 139Right-handed 310
Helix 22
AC4
A
143 158Right-handed alpha
Helix 23
AC5
A
166 169Right-handed 310
Helix 24
AC6
A
170 188Right-handed alpha
Helix 25
AC7
A
192 196Right-handed 310
Helix 26
AC8
A
199 204Right-handed alpha
Helix 27
AC9
A
221 231Right-handed alpha
Helix 28
AD1
A
243 248Right-handed alpha
Helix 29
AD2
A
248 263Right-handed alpha
Helix 30
AD3
C
35 38Right-handed 310
Helix 31
AD4
C
39 48Right-handed alpha
Helix 32
AD5
C
61 65Right-handed 310
Helix 33
AD6
C
68 72Right-handed 310
Helix 34
AD7
C
76 91Right-handed alpha
Helix 35
AD8
C
102 115Right-handed alpha
Helix 36
AD9
C
132 139Right-handed 310
Helix 37
AE1
C
143 156Right-handed alpha
Helix 38
AE2
C
166 169Right-handed 310
Helix 39
AE3
C
170 188Right-handed alpha
Helix 40
AE4
C
192 196Right-handed 310
Helix 41
AE5
C
221 231Right-handed alpha
Helix 42
AE6
C
243 248Right-handed alpha
Helix 43
AE7
C
248 263Right-handed alpha
Helix 44
AE8
D
35 38Right-handed 310
Helix 45
AE9
D
39 49Right-handed alpha
Helix 46
AF1
D
61 65Right-handed 310
Helix 47
AF2
D
68 72Right-handed 310
Helix 48
AF3
D
76 91Right-handed alpha
Helix 49
AF4
D
102 115Right-handed alpha
Helix 50
AF5
D
135 141Right-handed alpha
Helix 51
AF6
D
142 153Right-handed alpha
Helix 52
AF7
D
163 168Right-handed alpha
Helix 53
AF8
D
170 188Right-handed alpha
Helix 54
AF9
D
191 196Right-handed alpha
Helix 55
AG1
D
199 204Right-handed alpha
Helix 56
AG2
D
221 231Right-handed alpha
Helix 57
AG3
D
243 248Right-handed alpha
Helix 58
AG4
D
248 263Right-handed alpha
Helix 59
AG5
E
35 38Right-handed 310
Helix 60
AG6
E
39 48Right-handed alpha
Helix 61
AG7
E
61 65Right-handed 310
Helix 62
AG8
E
68 72Right-handed 310
Helix 63
AG9
E
76 91Right-handed alpha
Helix 64
AH1
E
102 115Right-handed alpha
Helix 65
AH2
E
135 141Right-handed alpha
Helix 66
AH3
E
142 158Right-handed alpha
Helix 67
AH4
E
166 169Right-handed 310
Helix 68
AH5
E
170 188Right-handed alpha
Helix 69
AH6
E
192 196Right-handed 310
Helix 70
AH7
E
201 205Right-handed 310
Helix 71
AH8
E
221 231Right-handed alpha
Helix 72
AH9
E
243 248Right-handed alpha
Helix 73
AI1
E
248 262Right-handed alpha
Helix 74
AI2
F
35 38Right-handed 310
Helix 75
AI3
F
39 48Right-handed alpha
Helix 76
AI4
F
61 65Right-handed 310
Helix 77
AI5
F
68 72Right-handed 310
Helix 78
AI6
F
76 91Right-handed alpha
Helix 79
AI7
F
102 115Right-handed alpha
Helix 80
AI8
F
132 139Right-handed 310
Helix 81
AI9
F
143 157Right-handed alpha
Helix 82
AJ1
F
166 169Right-handed 310
Helix 83
AJ2
F
170 188Right-handed alpha
Helix 84
AJ3
F
192 196Right-handed 310
Helix 85
AJ4
F
221 230Right-handed alpha
Helix 86
AJ5
F
243 248Right-handed alpha
Helix 87
AJ6
F
248 263Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8JLV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
14 20anti-parallel
Strand 3
B
52 56anti-parallel
Strand 4
B
25 29parallel
Strand 5
B
96 101parallel
Strand 6
B
119 125parallel
Strand 7
B
208 213parallel
Strand 8
B
235 238parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
52 56anti-parallel
Strand 4
A
25 29parallel
Strand 5
A
96 101parallel
Strand 6
A
119 125parallel
Strand 7
A
208 213parallel
Strand 8
A
235 238parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 8first strand
Strand 2
C
14 20anti-parallel
Strand 3
C
52 56anti-parallel
Strand 4
C
25 29parallel
Strand 5
C
96 101parallel
Strand 6
C
119 125parallel
Strand 7
C
208 213parallel
Strand 8
C
235 238parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 8first strand
Strand 2
D
14 20anti-parallel
Strand 3
D
52 56anti-parallel
Strand 4
D
25 29parallel
Strand 5
D
96 101parallel
Strand 6
D
119 125parallel
Strand 7
D
208 213parallel
Strand 8
D
235 238parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 8first strand
Strand 2
E
14 20anti-parallel
Strand 3
E
52 56anti-parallel
Strand 4
E
25 29parallel
Strand 5
E
96 101parallel
Strand 6
E
119 125parallel
Strand 7
E
208 213parallel
Strand 8
E
235 238parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 8first strand
Strand 2
F
14 20anti-parallel
Strand 3
F
52 56anti-parallel
Strand 4
F
25 29parallel
Strand 5
F
96 101parallel
Strand 6
F
119 125parallel
Strand 7
F
208 213parallel
Strand 8
F
235 238parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il