Analysis of interatomic Contacts of Structural Units in PDB entry:
8JMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JMK entry

There are 6 chains in PDB entry 8JMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 264
B
 MET 1GLY 264
C
 MET 1GLY 264
D
 MET 1GLY 264
E
 T 1 T 24
F
 A 1 A 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 65 helices in PDB entry 8JMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 30Right-handed alpha
Helix 2
AA2
A
44 49Right-handed alpha
Helix 3
AA3
A
53 57Right-handed 310
Helix 4
AA4
A
60 66Right-handed alpha
Helix 5
AA5
A
70 75Right-handed alpha
Helix 6
AA6
A
89 93Right-handed 310
Helix 7
AA7
A
94 104Right-handed alpha
Helix 8
AA8
A
111 117Right-handed alpha
Helix 9
AA9
A
136 146Right-handed alpha
Helix 10
AB1
A
158 176Right-handed alpha
Helix 11
AB2
A
195 210Right-handed alpha
Helix 12
AB3
A
211 213Right-handed 310
Helix 13
AB4
A
228 234Right-handed alpha
Helix 14
AB5
A
235 238Right-handed 310
Helix 15
AB6
A
240 245Right-handed alpha
Helix 16
AB7
A
248 263Right-handed alpha
Helix 17
AB8
B
16 30Right-handed alpha
Helix 18
AB9
B
44 50Right-handed alpha
Helix 19
AC1
B
53 57Right-handed 310
Helix 20
AC2
B
60 66Right-handed alpha
Helix 21
AC3
B
70 75Right-handed alpha
Helix 22
AC4
B
89 93Right-handed 310
Helix 23
AC5
B
94 101Right-handed alpha
Helix 24
AC6
B
101 106Right-handed alpha
Helix 25
AC7
B
111 117Right-handed alpha
Helix 26
AC8
B
120 124Right-handed 310
Helix 27
AC9
B
136 145Right-handed alpha
Helix 28
AD1
B
158 176Right-handed alpha
Helix 29
AD2
B
195 210Right-handed alpha
Helix 30
AD3
B
211 213Right-handed 310
Helix 31
AD4
B
228 234Right-handed alpha
Helix 32
AD5
B
235 238Right-handed 310
Helix 33
AD6
B
240 245Right-handed alpha
Helix 34
AD7
B
248 264Right-handed alpha
Helix 35
AD8
C
16 30Right-handed alpha
Helix 36
AD9
C
44 49Right-handed alpha
Helix 37
AE1
C
53 57Right-handed 310
Helix 38
AE2
C
60 66Right-handed alpha
Helix 39
AE3
C
70 75Right-handed alpha
Helix 40
AE4
C
89 93Right-handed 310
Helix 41
AE5
C
94 104Right-handed alpha
Helix 42
AE6
C
111 118Right-handed alpha
Helix 43
AE7
C
136 146Right-handed alpha
Helix 44
AE8
C
158 175Right-handed alpha
Helix 45
AE9
C
195 210Right-handed alpha
Helix 46
AF1
C
211 213Right-handed 310
Helix 47
AF2
C
228 234Right-handed alpha
Helix 48
AF3
C
235 238Right-handed 310
Helix 49
AF4
C
240 245Right-handed alpha
Helix 50
AF5
C
248 263Right-handed alpha
Helix 51
AF6
D
16 30Right-handed alpha
Helix 52
AF7
D
44 50Right-handed alpha
Helix 53
AF8
D
60 66Right-handed alpha
Helix 54
AF9
D
70 75Right-handed alpha
Helix 55
AG1
D
89 93Right-handed 310
Helix 56
AG2
D
94 106Right-handed alpha
Helix 57
AG3
D
111 117Right-handed alpha
Helix 58
AG4
D
136 145Right-handed alpha
Helix 59
AG5
D
157 176Right-handed alpha
Helix 60
AG6
D
195 210Right-handed alpha
Helix 61
AG7
D
211 213Right-handed 310
Helix 62
AG8
D
228 234Right-handed alpha
Helix 63
AG9
D
235 238Right-handed 310
Helix 64
AH1
D
240 244Right-handed 310
Helix 65
AH2
D
248 263Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8JMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
83 86anti-parallel
Strand 3
A
35 39parallel
Strand 4
A
126 130parallel
Strand 5
A
4 8parallel
Strand 6
A
148 154parallel
Strand 7
A
182 189parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 77first strand
Strand 2
B
83 86anti-parallel
Strand 3
B
35 39parallel
Strand 4
B
126 130parallel
Strand 5
B
4 8parallel
Strand 6
B
148 154parallel
Strand 7
B
182 189parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 77first strand
Strand 2
C
83 86anti-parallel
Strand 3
C
35 39parallel
Strand 4
C
126 130parallel
Strand 5
C
4 8parallel
Strand 6
C
148 154parallel
Strand 7
C
182 189parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
76 77first strand
Strand 2
D
83 86anti-parallel
Strand 3
D
35 39parallel
Strand 4
D
126 130parallel
Strand 5
D
4 8parallel
Strand 6
D
148 154parallel
Strand 7
D
182 189parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il