Analysis of interatomic Contacts of Structural Units in PDB entry:
8JML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JML entry

There are 2 chains in PDB entry 8JML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 264
B
 MET 2GLY 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8JML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 30Right-handed alpha
Helix 2
AA2
A
44 50Right-handed alpha
Helix 3
AA3
A
53 57Right-handed 310
Helix 4
AA4
A
60 66Right-handed alpha
Helix 5
AA5
A
70 74Right-handed 310
Helix 6
AA6
A
89 93Right-handed 310
Helix 7
AA7
A
94 106Right-handed alpha
Helix 8
AA8
A
111 118Right-handed alpha
Helix 9
AA9
A
136 146Right-handed alpha
Helix 10
AB1
A
158 176Right-handed alpha
Helix 11
AB2
A
195 210Right-handed alpha
Helix 12
AB3
A
211 213Right-handed 310
Helix 13
AB4
A
228 234Right-handed alpha
Helix 14
AB5
A
235 238Right-handed 310
Helix 15
AB6
A
240 245Right-handed alpha
Helix 16
AB7
A
248 263Right-handed alpha
Helix 17
AB8
B
16 30Right-handed alpha
Helix 18
AB9
B
44 50Right-handed alpha
Helix 19
AC1
B
53 57Right-handed 310
Helix 20
AC2
B
60 66Right-handed alpha
Helix 21
AC3
B
70 75Right-handed alpha
Helix 22
AC4
B
89 93Right-handed 310
Helix 23
AC5
B
94 106Right-handed alpha
Helix 24
AC6
B
108 110Right-handed 310
Helix 25
AC7
B
111 118Right-handed alpha
Helix 26
AC8
B
136 146Right-handed alpha
Helix 27
AC9
B
158 176Right-handed alpha
Helix 28
AD1
B
195 210Right-handed alpha
Helix 29
AD2
B
211 213Right-handed 310
Helix 30
AD3
B
228 234Right-handed alpha
Helix 31
AD4
B
235 238Right-handed 310
Helix 32
AD5
B
240 244Right-handed 310
Helix 33
AD6
B
248 264Right-handed alpha
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There are 2 sheets in PDB entry 8JML. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
83 86anti-parallel
Strand 3
A
35 39parallel
Strand 4
A
126 130parallel
Strand 5
A
4 8parallel
Strand 6
A
148 154parallel
Strand 7
A
182 189parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 77first strand
Strand 2
B
83 86anti-parallel
Strand 3
B
35 39parallel
Strand 4
B
126 130parallel
Strand 5
B
4 8parallel
Strand 6
B
148 154parallel
Strand 7
B
182 189parallel
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