Analysis of interatomic Contacts of Structural Units in PDB entry:
8JMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JMM entry

There are 18 chains in PDB entry 8JMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28SER 1147
B
 SER 28SER 1147
C
 SER 28SER 1147
D
 SER 28SER 1147
E
 SER 28SER 1147
F
 SER 28SER 1147
H
 GLU 1SER 260
I
 VAL 3SER 251
J
 GLU 1SER 260
K
 VAL 3SER 251
M
 VAL 3SER 251
N
 GLU 1SER 260
O
 VAL 3SER 251
P
 GLU 1SER 260
Q
 VAL 3SER 251
R
 GLU 1SER 260
G
 VAL 3SER 251
L
 GLU 1SER 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 94 helices in PDB entry 8JMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
294 304Right-handed alpha
Helix 2
AA2
A
338 343Right-handed alpha
Helix 3
AA3
A
367 371Right-handed 310
Helix 4
AA4
A
405 410Right-handed 310
Helix 5
AA5
A
747 754Right-handed alpha
Helix 6
AA6
A
761 782Right-handed alpha
Helix 7
AA7
A
816 824Right-handed alpha
Helix 8
AA8
A
866 884Right-handed alpha
Helix 9
AA9
A
886 890Right-handed 310
Helix 10
AB1
A
897 907Right-handed alpha
Helix 11
AB2
A
912 919Right-handed alpha
Helix 12
AB3
A
919 941Right-handed alpha
Helix 13
AB4
A
945 965Right-handed alpha
Helix 14
AB5
A
976 984Right-handed alpha
Helix 15
AB6
A
985 1033Right-handed alpha
Helix 16
AB7
B
294 304Right-handed alpha
Helix 17
AB8
B
367 371Right-handed 310
Helix 18
AB9
B
403 410Right-handed 310
Helix 19
AC1
B
746 754Right-handed alpha
Helix 20
AC2
B
760 782Right-handed alpha
Helix 21
AC3
B
816 824Right-handed alpha
Helix 22
AC4
B
866 884Right-handed alpha
Helix 23
AC5
B
886 890Right-handed 310
Helix 24
AC6
B
897 907Right-handed alpha
Helix 25
AC7
B
912 941Right-handed alpha
Helix 26
AC8
B
952 965Right-handed alpha
Helix 27
AC9
B
976 984Right-handed alpha
Helix 28
AD1
B
985 1033Right-handed alpha
Helix 29
AD2
C
294 304Right-handed alpha
Helix 30
AD3
C
366 371Right-handed 310
Helix 31
AD4
C
403 410Right-handed 310
Helix 32
AD5
C
746 754Right-handed alpha
Helix 33
AD6
C
755 757Right-handed 310
Helix 34
AD7
C
760 782Right-handed alpha
Helix 35
AD8
C
816 824Right-handed alpha
Helix 36
AD9
C
866 884Right-handed alpha
Helix 37
AE1
C
886 890Right-handed 310
Helix 38
AE2
C
897 907Right-handed alpha
Helix 39
AE3
C
913 941Right-handed alpha
Helix 40
AE4
C
945 965Right-handed alpha
Helix 41
AE5
C
976 984Right-handed alpha
Helix 42
AE6
C
985 1033Right-handed alpha
Helix 43
AE7
D
294 304Right-handed alpha
Helix 44
AE8
D
367 371Right-handed 310
Helix 45
AE9
D
406 410Right-handed 310
Helix 46
AF1
D
746 754Right-handed alpha
Helix 47
AF2
D
761 782Right-handed alpha
Helix 48
AF3
D
816 824Right-handed alpha
Helix 49
AF4
D
866 884Right-handed alpha
Helix 50
AF5
D
886 890Right-handed 310
Helix 51
AF6
D
897 907Right-handed alpha
Helix 52
AF7
D
913 941Right-handed alpha
Helix 53
AF8
D
942 946Right-handed 310
Helix 54
AF9
D
949 965Right-handed alpha
Helix 55
AG1
D
976 984Right-handed alpha
Helix 56
AG2
D
985 1033Right-handed alpha
Helix 57
AG3
E
294 304Right-handed alpha
Helix 58
AG4
E
338 343Right-handed alpha
Helix 59
AG5
E
366 371Right-handed 310
Helix 60
AG6
E
385 390Right-handed 310
Helix 61
AG7
E
403 410Right-handed 310
Helix 62
AG8
E
747 752Right-handed alpha
Helix 63
AG9
E
758 782Right-handed alpha
Helix 64
AH1
E
816 824Right-handed alpha
Helix 65
AH2
E
866 884Right-handed alpha
Helix 66
AH3
E
886 890Right-handed 310
Helix 67
AH4
E
897 908Right-handed alpha
Helix 68
AH5
E
912 941Right-handed alpha
Helix 69
AH6
E
945 965Right-handed alpha
Helix 70
AH7
E
976 983Right-handed alpha
Helix 71
AH8
E
985 1033Right-handed alpha
Helix 72
AH9
F
294 304Right-handed alpha
Helix 73
AI1
F
367 371Right-handed 310
Helix 74
AI2
F
385 389Right-handed 310
Helix 75
AI3
F
405 410Right-handed 310
Helix 76
AI4
F
746 754Right-handed alpha
Helix 77
AI5
F
761 782Right-handed alpha
Helix 78
AI6
F
816 824Right-handed alpha
Helix 79
AI7
F
866 884Right-handed alpha
Helix 80
AI8
F
886 890Right-handed 310
Helix 81
AI9
F
897 907Right-handed alpha
Helix 82
AJ1
F
913 941Right-handed alpha
Helix 83
AJ2
F
949 965Right-handed alpha
Helix 84
AJ3
F
976 984Right-handed alpha
Helix 85
AJ4
F
985 1033Right-handed alpha
Helix 86
AJ5
H
239 246Right-handed alpha
Helix 87
AJ6
J
230 235Right-handed alpha
Helix 88
AJ7
J
239 246Right-handed alpha
Helix 89
AJ8
N
229 235Right-handed alpha
Helix 90
AJ9
N
240 246Right-handed alpha
Helix 91
AK1
P
230 235Right-handed alpha
Helix 92
AK2
P
239 246Right-handed alpha
Helix 93
AK3
R
239 246Right-handed alpha
Helix 94
AK4
L
239 246Right-handed alpha
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