Analysis of interatomic Contacts of Structural Units in PDB entry:
8JMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JMR entry

There are 2 chains in PDB entry 8JMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4MET 174
B
 GLU 7ARG 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8JMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 30Right-handed 310
Helix 2
AA2
A
76 78Right-handed 310
Helix 3
AA3
A
121 125Right-handed 310
Helix 4
AA4
B
30 34Right-handed 310
Helix 5
AA5
B
80 82Right-handed 310
Helix 6
AA6
B
125 129Right-handed 310
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There are 4 sheets in PDB entry 8JMR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
B
45 52parallel
Strand 3
B
59 65anti-parallel
Strand 4
B
163 174anti-parallel
Strand 5
B
87 101anti-parallel
Strand 6
B
134 143anti-parallel
Strand 7
A
12 15parallel
Strand 8
A
21 25anti-parallel
Strand 9
A
159 170anti-parallel
Strand 10
A
83 97anti-parallel
Strand 11
A
130 139anti-parallel
Strand 12
B
16 19parallel
Strand 13
B
25 29anti-parallel
Strand 14
B
163 174anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
67 74anti-parallel
Strand 3
A
145 152anti-parallel
Strand 4
A
104 109anti-parallel
Strand 5
A
115 120anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 61first strand
Strand 2
A
41 48anti-parallel
Strand 3
B
10 13parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
71 78anti-parallel
Strand 3
B
149 156anti-parallel
Strand 4
B
108 113anti-parallel
Strand 5
B
119 124anti-parallel
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