Analysis of interatomic Contacts of Structural Units in PDB entry:
8JMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JMZ entry

There are 2 chains in PDB entry 8JMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 460GLU 765
B
 GLY 456ASN 763
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8JMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
474 476Right-handed 310
Helix 2
AA2
A
521 539Right-handed alpha
Helix 3
AA3
A
568 575Right-handed alpha
Helix 4
AA4
A
596 617Right-handed alpha
Helix 5
AA5
A
625 627Right-handed 310
Helix 6
AA6
A
662 667Right-handed 310
Helix 7
AA7
A
668 675Right-handed alpha
Helix 8
AA8
A
678 695Right-handed alpha
Helix 9
AA9
A
705 707Right-handed 310
Helix 10
AB1
A
708 715Right-handed alpha
Helix 11
AB2
A
726 737Right-handed alpha
Helix 12
AB3
A
740 744Right-handed 310
Helix 13
AB4
A
746 761Right-handed alpha
Helix 14
AB5
B
458 463Right-handed 310
Helix 15
AB6
B
474 476Right-handed 310
Helix 16
AB7
B
521 539Right-handed alpha
Helix 17
AB8
B
568 576Right-handed alpha
Helix 18
AB9
B
596 617Right-handed alpha
Helix 19
AC1
B
625 627Right-handed 310
Helix 20
AC2
B
662 667Right-handed 310
Helix 21
AC3
B
668 675Right-handed alpha
Helix 22
AC4
B
678 695Right-handed alpha
Helix 23
AC5
B
705 715Right-handed alpha
Helix 24
AC6
B
726 737Right-handed alpha
Helix 25
AC7
B
740 744Right-handed 310
Helix 26
AC8
B
746 761Right-handed alpha
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There are 4 sheets in PDB entry 8JMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 486first strand
Strand 2
A
490 498anti-parallel
Strand 3
A
508 516anti-parallel
Strand 4
A
558 562anti-parallel
Strand 5
A
547 551anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 631first strand
Strand 2
A
637 639anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
478 483first strand
Strand 2
B
492 498anti-parallel
Strand 3
B
508 514anti-parallel
Strand 4
B
558 562anti-parallel
Strand 5
B
547 551anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
629 631first strand
Strand 2
B
637 639anti-parallel
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