Analysis of interatomic Contacts of Structural Units in PDB entry:
8JN1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JN1 entry

There are 8 chains in PDB entry 8JN1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 493
B	SER 1	THR 75
C	MET 1	ALA 493
D	SER 1	THR 75
E	MET 1	ALA 493
F	SER 1	THR 75
H	GLN 1	SER 122
L	SER 2	LEU 110

There are 42 helices in PDB entry 8JN1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	184	188	Right-handed 310
Helix 2	AA2	A	190	194	Right-handed 310
Helix 3	AA3	A	207	212	Right-handed alpha
Helix 4	AA4	A	231	235	Right-handed 310
Helix 5	AA5	A	254	262	Right-handed alpha
Helix 6	AA6	A	394	414	Right-handed alpha
Helix 7	AA7	A	415	420	Right-handed 310
Helix 8	AA8	A	426	446	Right-handed alpha
Helix 9	AA9	A	450	467	Right-handed alpha
Helix 10	AB1	A	470	491	Right-handed alpha
Helix 11	AB2	B	20	25	Right-handed alpha
Helix 12	AB3	B	26	39	Right-handed alpha
Helix 13	AB4	B	40	52	Right-handed alpha
Helix 14	AB5	B	56	71	Right-handed alpha
Helix 15	AB6	C	190	192	Right-handed 310
Helix 16	AB7	C	208	214	Right-handed alpha
Helix 17	AB8	C	231	236	Right-handed 310
Helix 18	AB9	C	254	262	Right-handed alpha
Helix 19	AC1	C	394	414	Right-handed alpha
Helix 20	AC2	C	415	420	Right-handed 310
Helix 21	AC3	C	425	447	Right-handed alpha
Helix 22	AC4	C	450	467	Right-handed alpha
Helix 23	AC5	C	470	491	Right-handed alpha
Helix 24	AC6	D	20	39	Right-handed alpha
Helix 25	AC7	D	40	52	Right-handed alpha
Helix 26	AC8	D	56	71	Right-handed alpha
Helix 27	AC9	E	82	86	Right-handed 310
Helix 28	AD1	E	131	135	Right-handed 310
Helix 29	AD2	E	185	188	Right-handed 310
Helix 30	AD3	E	208	213	Right-handed alpha
Helix 31	AD4	E	231	234	Right-handed 310
Helix 32	AD5	E	254	262	Right-handed alpha
Helix 33	AD6	E	394	413	Right-handed alpha
Helix 34	AD7	E	414	420	Right-handed 310
Helix 35	AD8	E	425	446	Right-handed alpha
Helix 36	AD9	E	450	467	Right-handed alpha
Helix 37	AE1	E	470	491	Right-handed alpha
Helix 38	AE2	F	20	39	Right-handed alpha
Helix 39	AE3	F	40	52	Right-handed alpha
Helix 40	AE4	F	56	75	Right-handed alpha
Helix 41	AE5	H	28	32	Right-handed 310
Helix 42	AE6	L	80	84	Right-handed 310

There are 36 sheets in PDB entry 8JN1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	31	33	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	135	141	anti-parallel
Strand 5	A	158	162	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	284	286	anti-parallel
Strand 3	A	177	182	anti-parallel
Strand 4	A	169	173	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	280	281	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	57	first strand
Strand 2	A	127	130	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	109	120	anti-parallel
Strand 3	A	71	72	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	109	120	anti-parallel
Strand 3	A	90	99	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	267	268	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	247	249	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	312	first strand
Strand 2	A	318	324	anti-parallel
Strand 3	A	363	368	anti-parallel
Strand 4	A	348	349	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	377	first strand
Strand 2	A	386	390	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	30	33	parallel
Strand 3	C	41	50	anti-parallel
Strand 4	C	136	143	anti-parallel
Strand 5	C	158	162	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	30	33	parallel
Strand 3	C	41	50	anti-parallel
Strand 4	C	274	276	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	280	290	anti-parallel
Strand 3	C	177	184	anti-parallel
Strand 4	C	168	172	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	219	first strand
Strand 2	C	54	60	anti-parallel
Strand 3	C	124	129	anti-parallel
Strand 4	C	194	199	anti-parallel
Strand 5	C	202	207	anti-parallel
Strand 6	C	267	268	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	72	first strand
Strand 2	C	109	118	anti-parallel
Strand 3	C	90	91	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	72	first strand
Strand 2	C	109	118	anti-parallel
Strand 3	C	94	99	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	240	first strand
Strand 2	C	246	249	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	306	first strand
Strand 2	C	318	324	anti-parallel
Strand 3	C	311	312	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	306	first strand
Strand 2	C	318	324	anti-parallel
Strand 3	C	363	367	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	339	first strand
Strand 2	C	372	377	anti-parallel
Strand 3	C	386	391	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	31	34	parallel
Strand 3	E	41	47	anti-parallel
Strand 4	E	138	143	anti-parallel
Strand 5	E	158	161	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	26	first strand
Strand 2	E	280	286	anti-parallel
Strand 3	E	177	184	anti-parallel
Strand 4	E	169	173	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	72	first strand
Strand 2	E	109	129	anti-parallel
Strand 3	E	94	99	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	91	first strand
Strand 2	E	109	129	anti-parallel
Strand 3	E	194	199	anti-parallel
Strand 4	E	202	207	anti-parallel
Strand 5	E	266	267	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	236	241	first strand
Strand 2	E	245	250	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	312	first strand
Strand 2	E	318	324	anti-parallel
Strand 3	E	363	367	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	331	332	first strand
Strand 2	E	355	356	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	336	338	first strand
Strand 2	E	373	377	anti-parallel
Strand 3	E	386	390	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	22	25	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	92	94	anti-parallel
Strand 4	H	37	39	anti-parallel
Strand 5	H	45	47	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	20	first strand
Strand 2	H	80	83	anti-parallel
Strand 3	H	68	71	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	34	first strand
Strand 2	H	98	99	anti-parallel
Strand 3	H	109	110	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	51	first strand
Strand 2	H	58	60	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	23	first strand
Strand 2	L	71	75	anti-parallel
Strand 3	L	64	68	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	47	first strand
Strand 2	L	35	39	anti-parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	99	101	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	47	first strand
Strand 2	L	35	39	anti-parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	106	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JN1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JN1