Analysis of interatomic Contacts of Structural Units in PDB entry:
8JN2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JN2 entry

There are 8 chains in PDB entry 8JN2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 493
B	SER 1	THR 75
C	MET 1	ALA 493
D	SER 1	THR 75
E	MET 1	ALA 493
F	SER 1	THR 75
H	GLN 1	SER 122
L	SER 2	LEU 110

There are 44 helices in PDB entry 8JN2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	100	104	Right-handed 310
Helix 2	AA2	A	131	133	Right-handed 310
Helix 3	AA3	A	147	151	Right-handed 310
Helix 4	AA4	A	185	188	Right-handed 310
Helix 5	AA5	A	207	213	Right-handed alpha
Helix 6	AA6	A	231	234	Right-handed 310
Helix 7	AA7	A	254	262	Right-handed alpha
Helix 8	AA8	A	394	414	Right-handed alpha
Helix 9	AA9	A	415	419	Right-handed 310
Helix 10	AB1	A	427	444	Right-handed alpha
Helix 11	AB2	A	450	466	Right-handed alpha
Helix 12	AB3	A	470	489	Right-handed alpha
Helix 13	AB4	B	20	39	Right-handed alpha
Helix 14	AB5	B	40	53	Right-handed alpha
Helix 15	AB6	B	57	75	Right-handed alpha
Helix 16	AB7	C	16	18	Right-handed 310
Helix 17	AB8	C	100	104	Right-handed 310
Helix 18	AB9	C	208	212	Right-handed alpha
Helix 19	AC1	C	254	262	Right-handed alpha
Helix 20	AC2	C	394	414	Right-handed alpha
Helix 21	AC3	C	415	420	Right-handed 310
Helix 22	AC4	C	425	446	Right-handed alpha
Helix 23	AC5	C	450	467	Right-handed alpha
Helix 24	AC6	C	470	491	Right-handed alpha
Helix 25	AC7	D	20	25	Right-handed alpha
Helix 26	AC8	D	26	39	Right-handed alpha
Helix 27	AC9	D	40	54	Right-handed alpha
Helix 28	AD1	D	56	75	Right-handed alpha
Helix 29	AD2	E	82	87	Right-handed 310
Helix 30	AD3	E	100	104	Right-handed 310
Helix 31	AD4	E	131	135	Right-handed 310
Helix 32	AD5	E	185	188	Right-handed 310
Helix 33	AD6	E	207	213	Right-handed alpha
Helix 34	AD7	E	231	235	Right-handed 310
Helix 35	AD8	E	254	262	Right-handed alpha
Helix 36	AD9	E	394	414	Right-handed alpha
Helix 37	AE1	E	415	417	Right-handed 310
Helix 38	AE2	E	425	446	Right-handed alpha
Helix 39	AE3	E	450	467	Right-handed alpha
Helix 40	AE4	E	471	490	Right-handed alpha
Helix 41	AE5	F	26	39	Right-handed alpha
Helix 42	AE6	F	40	53	Right-handed alpha
Helix 43	AE7	F	56	71	Right-handed alpha
Helix 44	AE8	L	80	84	Right-handed 310

There are 38 sheets in PDB entry 8JN2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	31	33	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	135	143	anti-parallel
Strand 5	A	158	161	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	25	first strand
Strand 2	A	281	286	anti-parallel
Strand 3	A	179	183	anti-parallel
Strand 4	A	168	171	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	125	126	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	72	first strand
Strand 2	A	109	119	anti-parallel
Strand 3	A	93	99	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	203	206	anti-parallel
Strand 3	A	267	268	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	249	250	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	241	first strand
Strand 2	A	245	246	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	308	first strand
Strand 2	A	318	323	anti-parallel
Strand 3	A	364	368	anti-parallel
Strand 4	A	348	349	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	339	first strand
Strand 2	A	373	377	anti-parallel
Strand 3	A	386	390	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	30	33	parallel
Strand 3	C	41	45	anti-parallel
Strand 4	C	137	143	anti-parallel
Strand 5	C	158	162	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	280	286	anti-parallel
Strand 3	C	178	181	anti-parallel
Strand 4	C	169	172	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	274	276	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	127	129	anti-parallel
Strand 3	C	194	199	anti-parallel
Strand 4	C	202	207	anti-parallel
Strand 5	C	266	267	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	124	125	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	120	121	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	72	first strand
Strand 2	C	109	118	anti-parallel
Strand 3	C	90	91	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	72	first strand
Strand 2	C	109	118	anti-parallel
Strand 3	C	94	99	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	240	first strand
Strand 2	C	246	249	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	306	first strand
Strand 2	C	318	324	anti-parallel
Strand 3	C	311	312	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	306	first strand
Strand 2	C	318	324	anti-parallel
Strand 3	C	363	367	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	338	first strand
Strand 2	C	372	377	anti-parallel
Strand 3	C	387	391	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	31	32	parallel
Strand 3	E	41	49	anti-parallel
Strand 4	E	136	143	anti-parallel
Strand 5	E	158	162	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	26	first strand
Strand 2	E	280	286	anti-parallel
Strand 3	E	180	183	anti-parallel
Strand 4	E	168	169	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	55	first strand
Strand 2	E	127	129	anti-parallel
Strand 3	E	195	197	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	62	first strand
Strand 2	E	122	125	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	72	first strand
Strand 2	E	109	119	anti-parallel
Strand 3	E	90	99	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	237	239	first strand
Strand 2	E	247	249	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	270	first strand
Strand 2	E	274	275	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	306	first strand
Strand 2	E	317	324	anti-parallel
Strand 3	E	311	313	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	306	first strand
Strand 2	E	317	324	anti-parallel
Strand 3	E	363	367	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	336	339	first strand
Strand 2	E	374	377	anti-parallel
Strand 3	E	386	389	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	4	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	34	first strand
Strand 2	H	98	99	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	47	first strand
Strand 2	H	37	39	anti-parallel
Strand 3	H	92	94	anti-parallel
Strand 4	H	116	118	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	11	first strand
Strand 2	L	105	109	parallel
Strand 3	L	85	93	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	49	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	11	first strand
Strand 2	L	105	109	parallel
Strand 3	L	85	93	anti-parallel
Strand 4	L	98	101	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	63	64	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	67	68	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JN2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JN2