Analysis of interatomic Contacts of Structural Units in PDB entry:
8JN4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JN4 entry

There are 8 chains in PDB entry 8JN4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 493
B	SER 1	THR 75
C	MET 1	ALA 493
D	SER 1	THR 75
E	MET 1	ALA 493
F	SER 1	THR 75
H	GLN 1	SER 122
L	HIS 1	LYS 113

There are 41 helices in PDB entry 8JN4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	100	104	Right-handed 310
Helix 2	AA2	A	131	133	Right-handed 310
Helix 3	AA3	A	208	213	Right-handed alpha
Helix 4	AA4	A	231	235	Right-handed 310
Helix 5	AA5	A	254	262	Right-handed alpha
Helix 6	AA6	A	394	414	Right-handed alpha
Helix 7	AA7	A	415	420	Right-handed 310
Helix 8	AA8	A	426	447	Right-handed alpha
Helix 9	AA9	A	450	467	Right-handed alpha
Helix 10	AB1	A	470	489	Right-handed alpha
Helix 11	AB2	B	20	39	Right-handed alpha
Helix 12	AB3	B	40	54	Right-handed alpha
Helix 13	AB4	B	56	75	Right-handed alpha
Helix 14	AB5	C	82	86	Right-handed 310
Helix 15	AB6	C	100	104	Right-handed 310
Helix 16	AB7	C	131	135	Right-handed 310
Helix 17	AB8	C	208	214	Right-handed alpha
Helix 18	AB9	C	231	235	Right-handed 310
Helix 19	AC1	C	254	261	Right-handed alpha
Helix 20	AC2	C	394	411	Right-handed alpha
Helix 21	AC3	C	415	420	Right-handed 310
Helix 22	AC4	C	425	447	Right-handed alpha
Helix 23	AC5	C	450	468	Right-handed alpha
Helix 24	AC6	C	470	491	Right-handed alpha
Helix 25	AC7	D	26	39	Right-handed alpha
Helix 26	AC8	D	40	54	Right-handed alpha
Helix 27	AC9	D	56	75	Right-handed alpha
Helix 28	AD1	E	16	18	Right-handed 310
Helix 29	AD2	E	82	87	Right-handed 310
Helix 30	AD3	E	190	194	Right-handed 310
Helix 31	AD4	E	207	213	Right-handed alpha
Helix 32	AD5	E	231	234	Right-handed 310
Helix 33	AD6	E	254	262	Right-handed alpha
Helix 34	AD7	E	394	413	Right-handed alpha
Helix 35	AD8	E	415	419	Right-handed 310
Helix 36	AD9	E	426	446	Right-handed alpha
Helix 37	AE1	E	450	468	Right-handed alpha
Helix 38	AE2	E	471	489	Right-handed alpha
Helix 39	AE3	F	26	39	Right-handed alpha
Helix 40	AE4	F	40	52	Right-handed alpha
Helix 41	AE5	F	58	75	Right-handed alpha

There are 34 sheets in PDB entry 8JN4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	31	33	parallel
Strand 3	A	42	50	anti-parallel
Strand 4	A	135	142	anti-parallel
Strand 5	A	158	162	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	31	33	parallel
Strand 3	A	42	50	anti-parallel
Strand 4	A	274	276	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	26	first strand
Strand 2	A	280	286	anti-parallel
Strand 3	A	177	183	anti-parallel
Strand 4	A	169	173	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	128	129	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	218	219	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	73	first strand
Strand 2	A	109	120	anti-parallel
Strand 3	A	90	99	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	206	207	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	202	204	anti-parallel
Strand 3	A	267	268	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	240	first strand
Strand 2	A	246	249	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	313	first strand
Strand 2	A	317	323	anti-parallel
Strand 3	A	363	368	anti-parallel
Strand 4	A	348	349	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	339	first strand
Strand 2	A	373	377	anti-parallel
Strand 3	A	386	390	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	31	33	parallel
Strand 3	C	41	47	anti-parallel
Strand 4	C	137	143	anti-parallel
Strand 5	C	158	162	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	280	286	anti-parallel
Strand 3	C	177	181	anti-parallel
Strand 4	C	169	173	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	59	first strand
Strand 2	C	125	129	anti-parallel
Strand 3	C	194	198	anti-parallel
Strand 4	C	203	207	anti-parallel
Strand 5	C	267	268	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	72	first strand
Strand 2	C	109	122	anti-parallel
Strand 3	C	90	99	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	238	first strand
Strand 2	C	248	249	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	312	first strand
Strand 2	C	318	324	anti-parallel
Strand 3	C	366	368	anti-parallel
Strand 4	C	348	349	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	377	first strand
Strand 2	C	386	390	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	31	33	parallel
Strand 3	E	41	50	anti-parallel
Strand 4	E	136	143	anti-parallel
Strand 5	E	158	162	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	31	33	parallel
Strand 3	E	41	50	anti-parallel
Strand 4	E	274	276	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	25	first strand
Strand 2	E	281	286	anti-parallel
Strand 3	E	180	184	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	72	first strand
Strand 2	E	109	129	anti-parallel
Strand 3	E	90	99	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	72	first strand
Strand 2	E	109	129	anti-parallel
Strand 3	E	195	198	anti-parallel
Strand 4	E	203	206	anti-parallel
Strand 5	E	267	268	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	219	first strand
Strand 2	E	229	230	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	236	239	first strand
Strand 2	E	247	250	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	308	first strand
Strand 2	E	320	324	anti-parallel
Strand 3	E	363	365	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	331	332	first strand
Strand 2	E	355	356	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	336	338	first strand
Strand 2	E	373	377	anti-parallel
Strand 3	E	386	390	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	348	349	first strand
Strand 2	E	367	368	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	76	81	anti-parallel
Strand 4	L	69	71	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	108	112	parallel
Strand 3	L	90	92	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	50	54	first strand
Strand 2	L	39	44	anti-parallel
Strand 3	L	94	96	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JN4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JN4