Analysis of interatomic Contacts of Structural Units in PDB entry:
8JN9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JN9 entry

There are 2 chains in PDB entry 8JN9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 86GLN 529
A
 GLN 531LEU 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8JN9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
145 149Right-handed 310
Helix 2
AA2
A
157 166Right-handed alpha
Helix 3
AA3
A
225 234Right-handed alpha
Helix 4
AA4
A
266 268Right-handed 310
Helix 5
AA5
A
306 318Right-handed alpha
Helix 6
AA6
A
348 354Right-handed alpha
Helix 7
AA7
A
362 383Right-handed alpha
Helix 8
AA8
A
391 393Right-handed 310
Helix 9
AA9
A
399 401Right-handed 310
Helix 10
AB1
A
410 414Right-handed 310
Helix 11
AB2
A
416 421Right-handed alpha
Helix 12
AB3
A
428 432Right-handed 310
Helix 13
AB4
A
433 440Right-handed alpha
Helix 14
AB5
A
443 460Right-handed alpha
Helix 15
AB6
A
470 480Right-handed alpha
Helix 16
AB7
A
491 502Right-handed alpha
Helix 17
AB8
A
505 509Right-handed 310
Helix 18
AB9
A
511 521Right-handed alpha
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There are 4 sheets in PDB entry 8JN9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 136first strand
Strand 2
A
121 126anti-parallel
Strand 3
A
110 113anti-parallel
Strand 4
A
87 91anti-parallel
Strand 5
A
140 142anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
215 218anti-parallel
Strand 3
A
199 209anti-parallel
Strand 4
A
187 195anti-parallel
Strand 5
A
174 179anti-parallel
Strand 6
A
246 247parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 278first strand
Strand 2
A
282 289anti-parallel
Strand 3
A
293 300anti-parallel
Strand 4
A
338 342anti-parallel
Strand 5
A
328 332anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
403 405anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il