Analysis of interatomic Contacts of Structural Units in PDB entry:
8JNI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JNI entry

There are 2 chains in PDB entry 8JNI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 673ALA 1221
A
 ASP 673ALA 1221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8JNI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
682 693Right-handed alpha
Helix 2
AA2
B
695 702Right-handed alpha
Helix 3
AA3
B
705 734Right-handed alpha
Helix 4
AA4
B
739 758Right-handed alpha
Helix 5
AA5
B
768 785Right-handed alpha
Helix 6
AA6
B
788 811Right-handed alpha
Helix 7
AA7
B
812 819Right-handed 310
Helix 8
AA8
B
820 850Right-handed alpha
Helix 9
AA9
B
899 924Right-handed alpha
Helix 10
AB1
B
928 938Right-handed alpha
Helix 11
AB2
B
938 954Right-handed alpha
Helix 12
AB3
B
992 997Right-handed alpha
Helix 13
AB4
B
997 1020Right-handed alpha
Helix 14
AB5
B
1031 1047Right-handed alpha
Helix 15
AB6
B
1048 1050Right-handed 310
Helix 16
AB7
B
1057 1069Right-handed alpha
Helix 17
AB8
B
1089 1107Right-handed alpha
Helix 18
AB9
B
1114 1131Right-handed alpha
Helix 19
AC1
B
1133 1141Right-handed alpha
Helix 20
AC2
B
1145 1149Right-handed 310
Helix 21
AC3
B
1152 1157Right-handed alpha
Helix 22
AC4
B
1159 1183Right-handed alpha
Helix 23
AC5
B
1188 1195Right-handed alpha
Helix 24
AC6
B
1195 1203Right-handed alpha
Helix 25
AC7
B
1203 1208Right-handed alpha
Helix 26
AC8
B
1209 1217Right-handed alpha
Helix 27
AC9
A
682 693Right-handed alpha
Helix 28
AD1
A
695 702Right-handed alpha
Helix 29
AD2
A
705 734Right-handed alpha
Helix 30
AD3
A
739 758Right-handed alpha
Helix 31
AD4
A
768 785Right-handed alpha
Helix 32
AD5
A
788 811Right-handed alpha
Helix 33
AD6
A
812 819Right-handed 310
Helix 34
AD7
A
820 850Right-handed alpha
Helix 35
AD8
A
899 924Right-handed alpha
Helix 36
AD9
A
928 938Right-handed alpha
Helix 37
AE1
A
938 954Right-handed alpha
Helix 38
AE2
A
992 997Right-handed alpha
Helix 39
AE3
A
997 1020Right-handed alpha
Helix 40
AE4
A
1031 1047Right-handed alpha
Helix 41
AE5
A
1048 1050Right-handed 310
Helix 42
AE6
A
1057 1069Right-handed alpha
Helix 43
AE7
A
1089 1107Right-handed alpha
Helix 44
AE8
A
1114 1131Right-handed alpha
Helix 45
AE9
A
1133 1141Right-handed alpha
Helix 46
AF1
A
1145 1149Right-handed 310
Helix 47
AF2
A
1152 1157Right-handed alpha
Helix 48
AF3
A
1159 1183Right-handed alpha
Helix 49
AF4
A
1188 1195Right-handed alpha
Helix 50
AF5
A
1195 1203Right-handed alpha
Helix 51
AF6
A
1203 1208Right-handed alpha
Helix 52
AF7
A
1209 1217Right-handed alpha
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There are 2 sheets in PDB entry 8JNI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
765 766first strand
Strand 2
B
1055 1056anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 766first strand
Strand 2
A
1055 1056anti-parallel
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