Analysis of interatomic Contacts of Structural Units in PDB entry:
8JNJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JNJ entry

There are 2 chains in PDB entry 8JNJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 320	ALA 1221
B	PRO 320	ALA 1221

There are 72 helices in PDB entry 8JNJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	370	381	Right-handed alpha
Helix 2	AA2	A	393	408	Right-handed alpha
Helix 3	AA3	A	415	424	Right-handed alpha
Helix 4	AA4	A	504	510	Right-handed alpha
Helix 5	AA5	A	568	582	Right-handed alpha
Helix 6	AA6	A	584	591	Right-handed alpha
Helix 7	AA7	A	594	607	Right-handed alpha
Helix 8	AA8	A	623	638	Right-handed alpha
Helix 9	AA9	A	682	693	Right-handed alpha
Helix 10	AB1	A	695	702	Right-handed alpha
Helix 11	AB2	A	705	734	Right-handed alpha
Helix 12	AB3	A	739	758	Right-handed alpha
Helix 13	AB4	A	768	785	Right-handed alpha
Helix 14	AB5	A	788	810	Right-handed alpha
Helix 15	AB6	A	811	818	Right-handed 310
Helix 16	AB7	A	820	850	Right-handed alpha
Helix 17	AB8	A	899	924	Right-handed alpha
Helix 18	AB9	A	928	935	Right-handed alpha
Helix 19	AC1	A	938	954	Right-handed alpha
Helix 20	AC2	A	990	997	Right-handed alpha
Helix 21	AC3	A	997	1020	Right-handed alpha
Helix 22	AC4	A	1021	1025	Right-handed 310
Helix 23	AC5	A	1032	1047	Right-handed alpha
Helix 24	AC6	A	1057	1068	Right-handed alpha
Helix 25	AC7	A	1090	1102	Right-handed alpha
Helix 26	AC8	A	1103	1105	Right-handed 310
Helix 27	AC9	A	1106	1111	Right-handed alpha
Helix 28	AD1	A	1114	1129	Right-handed alpha
Helix 29	AD2	A	1133	1142	Right-handed alpha
Helix 30	AD3	A	1145	1149	Right-handed 310
Helix 31	AD4	A	1152	1157	Right-handed alpha
Helix 32	AD5	A	1159	1183	Right-handed alpha
Helix 33	AD6	A	1185	1187	Right-handed 310
Helix 34	AD7	A	1188	1194	Right-handed alpha
Helix 35	AD8	A	1195	1208	Right-handed alpha
Helix 36	AD9	A	1209	1217	Right-handed alpha
Helix 37	AE1	B	370	381	Right-handed alpha
Helix 38	AE2	B	393	408	Right-handed alpha
Helix 39	AE3	B	415	424	Right-handed alpha
Helix 40	AE4	B	504	510	Right-handed alpha
Helix 41	AE5	B	568	582	Right-handed alpha
Helix 42	AE6	B	584	591	Right-handed alpha
Helix 43	AE7	B	594	607	Right-handed alpha
Helix 44	AE8	B	623	638	Right-handed alpha
Helix 45	AE9	B	682	693	Right-handed alpha
Helix 46	AF1	B	695	702	Right-handed alpha
Helix 47	AF2	B	705	734	Right-handed alpha
Helix 48	AF3	B	739	758	Right-handed alpha
Helix 49	AF4	B	768	785	Right-handed alpha
Helix 50	AF5	B	788	810	Right-handed alpha
Helix 51	AF6	B	811	818	Right-handed 310
Helix 52	AF7	B	820	850	Right-handed alpha
Helix 53	AF8	B	899	924	Right-handed alpha
Helix 54	AF9	B	928	935	Right-handed alpha
Helix 55	AG1	B	938	954	Right-handed alpha
Helix 56	AG2	B	990	997	Right-handed alpha
Helix 57	AG3	B	997	1020	Right-handed alpha
Helix 58	AG4	B	1021	1025	Right-handed 310
Helix 59	AG5	B	1032	1047	Right-handed alpha
Helix 60	AG6	B	1057	1068	Right-handed alpha
Helix 61	AG7	B	1090	1102	Right-handed alpha
Helix 62	AG8	B	1103	1105	Right-handed 310
Helix 63	AG9	B	1106	1111	Right-handed alpha
Helix 64	AH1	B	1114	1129	Right-handed alpha
Helix 65	AH2	B	1133	1142	Right-handed alpha
Helix 66	AH3	B	1145	1149	Right-handed 310
Helix 67	AH4	B	1152	1157	Right-handed alpha
Helix 68	AH5	B	1159	1183	Right-handed alpha
Helix 69	AH6	B	1185	1187	Right-handed 310
Helix 70	AH7	B	1188	1194	Right-handed alpha
Helix 71	AH8	B	1195	1208	Right-handed alpha
Helix 72	AH9	B	1209	1217	Right-handed alpha

There are 9 sheets in PDB entry 8JNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	360	first strand
Strand 2	A	351	354	anti-parallel
Strand 3	A	338	346	anti-parallel
Strand 4	A	325	332	anti-parallel
Strand 5	A	516	523	parallel
Strand 6	A	553	561	parallel
Strand 7	A	531	541	anti-parallel
Strand 8	A	384	389	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	360	first strand
Strand 2	A	351	354	anti-parallel
Strand 3	A	338	346	anti-parallel
Strand 4	A	427	428	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	369	first strand
Strand 2	B	610	612	anti-parallel
Strand 3	A	610	612	anti-parallel
Strand 4	B	368	369	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	765	766	first strand
Strand 2	A	1055	1056	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1069	1071	first strand
Strand 2	A	1083	1086	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	B	351	354	anti-parallel
Strand 3	B	338	346	anti-parallel
Strand 4	B	325	332	anti-parallel
Strand 5	B	516	523	parallel
Strand 6	B	553	561	parallel
Strand 7	B	531	541	anti-parallel
Strand 8	B	384	389	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	B	351	354	anti-parallel
Strand 3	B	338	346	anti-parallel
Strand 4	B	427	428	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	765	766	first strand
Strand 2	B	1055	1056	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1069	1071	first strand
Strand 2	B	1083	1086	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JNJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JNJ