Analysis of interatomic Contacts of Structural Units in PDB entry:
8JNK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JNK entry

There are 18 chains in PDB entry 8JNK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 70	PRO 279
B	T 4	T 4
B	T 6	G 9
C	ARG 70	ASP 280
D	T 6	G 9
E	ARG 70	PRO 279
F	T 4	T 4
F	T 6	G 9
G	VAL 71	PRO 279
H	T 6	G 9
I	GLU 1	LYS 220
J	GLU 1	LYS 220
K	VAL 2	PRO 219
L	VAL 2	PRO 219
M	ILE 3	GLU 216
N	ILE 3	GLU 216
O	ILE 3	GLU 216
P	ILE 3	GLU 216

There are 46 helices in PDB entry 8JNK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	113	Right-handed alpha
Helix 2	AA2	A	155	168	Right-handed alpha
Helix 3	AA3	A	195	199	Right-handed 310
Helix 4	AA4	A	250	254	Right-handed alpha
Helix 5	AA5	C	98	113	Right-handed alpha
Helix 6	AA6	C	155	170	Right-handed alpha
Helix 7	AA7	C	195	199	Right-handed 310
Helix 8	AA8	C	222	226	Right-handed 310
Helix 9	AA9	C	250	254	Right-handed alpha
Helix 10	AB1	E	98	113	Right-handed alpha
Helix 11	AB2	E	155	168	Right-handed alpha
Helix 12	AB3	E	195	199	Right-handed 310
Helix 13	AB4	E	222	226	Right-handed 310
Helix 14	AB5	E	228	232	Right-handed 310
Helix 15	AB6	E	250	254	Right-handed alpha
Helix 16	AB7	G	98	113	Right-handed alpha
Helix 17	AB8	G	155	170	Right-handed alpha
Helix 18	AB9	G	250	254	Right-handed alpha
Helix 19	AC1	I	87	91	Right-handed 310
Helix 20	AC2	I	162	164	Right-handed 310
Helix 21	AC3	I	193	198	Right-handed alpha
Helix 22	AC4	I	207	210	Right-handed 310
Helix 23	AC5	J	74	76	Right-handed 310
Helix 24	AC6	J	87	91	Right-handed 310
Helix 25	AC7	J	162	164	Right-handed 310
Helix 26	AC8	J	193	198	Right-handed alpha
Helix 27	AC9	J	207	210	Right-handed 310
Helix 28	AD1	K	62	65	Right-handed 310
Helix 29	AD2	K	87	91	Right-handed 310
Helix 30	AD3	K	162	164	Right-handed 310
Helix 31	AD4	K	191	196	Right-handed 310
Helix 32	AD5	K	207	210	Right-handed 310
Helix 33	AD6	L	87	91	Right-handed 310
Helix 34	AD7	L	162	164	Right-handed 310
Helix 35	AD8	M	80	84	Right-handed 310
Helix 36	AD9	M	124	129	Right-handed alpha
Helix 37	AE1	M	186	191	Right-handed alpha
Helix 38	AE2	N	80	84	Right-handed 310
Helix 39	AE3	N	124	130	Right-handed alpha
Helix 40	AE4	N	186	191	Right-handed alpha
Helix 41	AE5	O	80	84	Right-handed 310
Helix 42	AE6	O	124	130	Right-handed alpha
Helix 43	AE7	O	186	191	Right-handed alpha
Helix 44	AE8	P	80	84	Right-handed 310
Helix 45	AE9	P	124	129	Right-handed alpha
Helix 46	AF1	P	186	190	Right-handed alpha

There are 50 sheets in PDB entry 8JNK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	81	first strand
Strand 2	A	88	93	anti-parallel
Strand 3	A	244	249	anti-parallel
Strand 4	A	204	210	anti-parallel
Strand 5	A	269	275	anti-parallel
Strand 6	A	175	181	anti-parallel
Strand 7	A	132	136	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	122	first strand
Strand 2	A	125	128	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	146	148	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	191	first strand
Strand 2	A	255	259	anti-parallel
Strand 3	A	213	219	anti-parallel
Strand 4	A	234	239	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	81	first strand
Strand 2	C	88	93	anti-parallel
Strand 3	C	244	249	anti-parallel
Strand 4	C	204	210	anti-parallel
Strand 5	C	269	275	anti-parallel
Strand 6	C	175	181	anti-parallel
Strand 7	C	132	137	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	146	148	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	191	first strand
Strand 2	C	255	259	anti-parallel
Strand 3	C	213	219	anti-parallel
Strand 4	C	234	239	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	81	first strand
Strand 2	E	88	93	anti-parallel
Strand 3	E	244	249	anti-parallel
Strand 4	E	204	210	anti-parallel
Strand 5	E	269	275	anti-parallel
Strand 6	E	175	181	anti-parallel
Strand 7	E	132	137	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	143	first strand
Strand 2	E	146	148	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	188	191	first strand
Strand 2	E	255	259	anti-parallel
Strand 3	E	213	219	anti-parallel
Strand 4	E	234	239	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	81	first strand
Strand 2	G	88	93	anti-parallel
Strand 3	G	244	249	anti-parallel
Strand 4	G	204	210	anti-parallel
Strand 5	G	269	275	anti-parallel
Strand 6	G	175	181	anti-parallel
Strand 7	G	132	136	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	119	121	first strand
Strand 2	G	126	128	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	141	143	first strand
Strand 2	G	146	148	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	188	191	first strand
Strand 2	G	255	259	anti-parallel
Strand 3	G	213	219	anti-parallel
Strand 4	G	234	239	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	18	24	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	112	116	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	45	52	anti-parallel
Strand 6	I	57	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	112	116	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	107	108	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	125	129	first strand
Strand 2	I	142	151	anti-parallel
Strand 3	I	182	190	anti-parallel
Strand 4	I	169	171	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	125	129	first strand
Strand 2	I	142	151	anti-parallel
Strand 3	I	182	190	anti-parallel
Strand 4	I	175	176	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	157	160	first strand
Strand 2	I	201	206	anti-parallel
Strand 3	I	211	216	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	112	116	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	33	39	anti-parallel
Strand 5	J	45	52	anti-parallel
Strand 6	J	57	60	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	112	116	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	107	108	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	125	129	first strand
Strand 2	J	143	151	anti-parallel
Strand 3	J	182	189	anti-parallel
Strand 4	J	169	171	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	125	129	first strand
Strand 2	J	143	151	anti-parallel
Strand 3	J	182	189	anti-parallel
Strand 4	J	175	176	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	157	160	first strand
Strand 2	J	201	206	anti-parallel
Strand 3	J	211	216	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	112	116	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	33	39	anti-parallel
Strand 5	K	45	52	anti-parallel
Strand 6	K	57	60	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	112	116	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	107	108	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	125	129	first strand
Strand 2	K	143	151	anti-parallel
Strand 3	K	182	189	anti-parallel
Strand 4	K	169	171	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	125	129	first strand
Strand 2	K	143	151	anti-parallel
Strand 3	K	182	189	anti-parallel
Strand 4	K	175	176	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	157	160	first strand
Strand 2	K	200	206	anti-parallel
Strand 3	K	211	217	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	7	first strand
Strand 2	L	17	25	anti-parallel
Strand 3	L	78	84	anti-parallel
Strand 4	L	68	73	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	12	first strand
Strand 2	L	112	116	parallel
Strand 3	L	92	99	anti-parallel
Strand 4	L	33	39	anti-parallel
Strand 5	L	45	52	anti-parallel
Strand 6	L	58	60	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	12	first strand
Strand 2	L	112	116	parallel
Strand 3	L	92	99	anti-parallel
Strand 4	L	107	108	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	125	129	first strand
Strand 2	L	143	151	anti-parallel
Strand 3	L	182	189	anti-parallel
Strand 4	L	169	171	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	125	129	first strand
Strand 2	L	143	151	anti-parallel
Strand 3	L	182	189	anti-parallel
Strand 4	L	175	176	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	157	160	first strand
Strand 2	L	201	206	anti-parallel
Strand 3	L	211	216	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	14	first strand
Strand 2	M	105	109	parallel
Strand 3	M	86	90	anti-parallel
Strand 4	M	35	39	anti-parallel
Strand 5	M	46	50	anti-parallel
Strand 6	M	54	55	anti-parallel

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There are 7 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	63	68	first strand
Strand 2	M	71	76	anti-parallel
Strand 3	M	19	25	anti-parallel
Strand 4	O	156	159	parallel
Strand 5	O	148	153	anti-parallel
Strand 6	O	194	200	anti-parallel
Strand 7	O	208	213	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	117	121	first strand
Strand 2	M	132	142	anti-parallel
Strand 3	M	176	185	anti-parallel
Strand 4	M	162	166	anti-parallel

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There are 7 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	208	213	first strand
Strand 2	M	194	201	anti-parallel
Strand 3	M	147	153	anti-parallel
Strand 4	M	156	159	anti-parallel
Strand 5	O	19	25	parallel
Strand 6	O	71	76	anti-parallel
Strand 7	O	63	68	anti-parallel

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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	14	first strand
Strand 2	N	105	109	parallel
Strand 3	N	86	90	anti-parallel
Strand 4	N	35	39	anti-parallel
Strand 5	N	46	50	anti-parallel
Strand 6	N	54	55	anti-parallel

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There are 7 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	63	68	first strand
Strand 2	N	71	76	anti-parallel
Strand 3	N	19	25	anti-parallel
Strand 4	P	156	159	parallel
Strand 5	P	148	153	anti-parallel
Strand 6	P	194	200	anti-parallel
Strand 7	P	208	213	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	117	121	first strand
Strand 2	N	132	142	anti-parallel
Strand 3	N	176	185	anti-parallel
Strand 4	N	162	166	anti-parallel

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There are 7 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	208	213	first strand
Strand 2	N	194	201	anti-parallel
Strand 3	N	147	153	anti-parallel
Strand 4	N	156	159	anti-parallel
Strand 5	P	19	25	parallel
Strand 6	P	71	76	anti-parallel
Strand 7	P	63	68	anti-parallel

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There are 6 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	14	first strand
Strand 2	O	105	109	parallel
Strand 3	O	86	90	anti-parallel
Strand 4	O	35	39	anti-parallel
Strand 5	O	46	50	anti-parallel
Strand 6	O	54	55	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	117	121	first strand
Strand 2	O	132	142	anti-parallel
Strand 3	O	176	185	anti-parallel
Strand 4	O	162	166	anti-parallel

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There are 6 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	14	first strand
Strand 2	P	105	109	parallel
Strand 3	P	86	90	anti-parallel
Strand 4	P	35	39	anti-parallel
Strand 5	P	46	50	anti-parallel
Strand 6	P	54	55	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	117	121	first strand
Strand 2	P	132	142	anti-parallel
Strand 3	P	176	185	anti-parallel
Strand 4	P	162	163	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JNK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JNK