Analysis of interatomic Contacts of Structural Units in PDB entry:
8JNP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JNP entry

There is 1 chain in PDB entry 8JNP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 7TRP 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8JNP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 28Right-handed alpha
Helix 2
AA2
A
47 57Right-handed alpha
Helix 3
AA3
A
82 86Right-handed 310
Helix 4
AA4
A
89 103Right-handed alpha
Helix 5
AA5
A
103 108Right-handed alpha
Helix 6
AA6
A
110 129Right-handed alpha
Helix 7
AA7
A
134 138Right-handed alpha
Helix 8
AA8
A
140 152Right-handed alpha
Helix 9
AA9
A
154 156Right-handed 310
Helix 10
AB1
A
157 170Right-handed alpha
Helix 11
AB2
A
174 199Right-handed alpha
Helix 12
AB3
A
203 214Right-handed alpha
Helix 13
AB4
A
219 237Right-handed alpha
Helix 14
AB5
A
237 251Right-handed alpha
Helix 15
AB6
A
252 254Right-handed 310
Helix 16
AB7
A
255 262Right-handed alpha
Helix 17
AB8
A
265 277Right-handed alpha
Helix 18
AB9
A
309 314Right-handed alpha
Helix 19
AC1
A
340 344Right-handed 310
Helix 20
AC2
A
347 366Right-handed alpha
Helix 21
AC3
A
374 378Right-handed 310
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There are 3 sheets in PDB entry 8JNP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
32 35parallel
Strand 3
A
42 45anti-parallel
Strand 4
A
305 308parallel
Strand 5
A
287 289anti-parallel
Strand 6
A
60 61anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
393 395anti-parallel
Strand 3
A
370 371anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
298 300anti-parallel
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